CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G095410.1	Barley	nucleus	67.42	43.8
Zm00001d050368_P001	Maize	nucleus	77.53	37.7
EES15017	Sorghum	nucleus	83.15	37.37
Os08t0428800-00	Rice	nucleus	74.16	37.08
TraesCS5D01G400300.1	Wheat	nucleus	66.29	36.65
TraesCS5B01G395400.1	Wheat	nucleus	66.29	36.65
Zm00001d032239_P001	Maize	plastid	77.53	35.75
TraesCS5A01G390500.1	Wheat	nucleus	67.42	34.68
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.56	32.85
CDY09431	Canola	cytosol	41.57	32.46
PGSC0003DMT400040569	Potato	nucleus	52.81	29.38
Solyc11g011160.1.1	Tomato	nucleus	52.81	29.38
GSMUA_Achr6P04240_001	Banana	nucleus	57.3	29.14
GSMUA_Achr7P12540_001	Banana	cytosol	44.94	28.78
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	50.56	28.66
VIT_01s0011g05360.t01	Wine grape	nucleus	58.43	28.57
VIT_15s0021g02830.t01	Wine grape	nucleus	39.33	28.46
KRH72991	Soybean	nucleus	55.06	27.84
KRH72989	Soybean	nucleus	55.06	27.84
KRH30939	Soybean	nucleus	57.3	27.72
KRG97935	Soybean	nucleus	56.18	27.47
KRH17357	Soybean	nucleus	53.93	27.27
KRH17355	Soybean	nucleus	51.69	26.14
Bra017438.1-P	Field mustard	nucleus	47.19	25.61
CDY04096	Canola	nucleus	44.94	24.39
CDY48812	Canola	cytosol	35.96	24.24
Solyc04g007890.2.1	Tomato	nucleus	47.19	23.46
PGSC0003DMT400075917	Potato	nucleus	48.31	22.87
PGSC0003DMT400037815	Potato	nucleus	41.57	21.64
AT1G14900.1	Thale cress	nucleus	46.07	20.1
GSMUA_Achr5P05890_001	Banana	cytosol	57.3	19.62
CDY17659	Canola	nucleus	44.94	19.51
CDY36240	Canola	nucleus	44.94	19.42
Solyc05g051290.2.1	Tomato	nucleus	43.82	18.57
Bra024870.1-P	Field mustard	nucleus	38.2	17.8
VIT_13s0074g00560.t01	Wine grape	plastid	41.57	17.21
VIT_15s0024g01410.t01	Wine grape	plastid	41.57	17.21
CDY09432	Canola	nucleus	37.08	17.19
VIT_09s0018g01850.t01	Wine grape	plastid	40.45	16.74
CDY48811	Canola	mitochondrion, nucleus	40.45	14.63
EER98875	Sorghum	nucleus	52.81	14.46

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	UniProt:A0A1Z5RB00	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	EnsemblPlants:OQU80556	ProteinID:OQU80556	ProteinID:OQU80556.1	PFAM:PF00538
PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF85	SMART:SM00526	EnsemblPlantsGene:SORBI_3007G143250	SUPFAM:SSF46785
UniParc:UPI000B8BB288	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:57314841..57315381

Molecular Weight (calculated)

9583.6 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.408

Length

89 amino acids

Sequence
(BLAST)

1: MAIEEAAKPS PIPPYPEMIL EAIEGLGDKN GSNKSSISKY IQGKYGELPP AHACLLTAHL ARMKESGEVI LLKNHYFRAD APGAPPKRG

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.