Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 73.98 | 50.0 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 83.74 | 47.91 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 82.11 | 46.98 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 82.11 | 46.98 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 28.46 | 39.33 |
| Solyc04g007890.2.1 | Tomato | nucleus | 53.66 | 36.87 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 47.15 | 36.02 |
| CDY09431 | Canola | cytosol | 33.33 | 35.96 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 46.34 | 35.4 |
| PGSC0003DMT400075917 | Potato | nucleus | 52.85 | 34.57 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 38.21 | 34.31 |
| Bra017438.1-P | Field mustard | nucleus | 45.53 | 34.15 |
| CDY04096 | Canola | nucleus | 44.72 | 33.54 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 47.15 | 33.53 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 47.15 | 33.14 |
| Zm00001d050368_P001 | Maize | nucleus | 48.78 | 32.79 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.77 | 32.12 |
| Os08t0428800-00 | Rice | nucleus | 46.34 | 32.02 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 34.15 | 30.22 |
| CDY48812 | Canola | cytosol | 31.71 | 29.55 |
| Bra024870.1-P | Field mustard | nucleus | 44.72 | 28.8 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 43.9 | 28.57 |
| AT1G14900.1 | Thale cress | nucleus | 47.15 | 28.43 |
| CDY17659 | Canola | nucleus | 47.15 | 28.29 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 39.02 | 28.24 |
| CDY36240 | Canola | nucleus | 47.15 | 28.16 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 43.09 | 28.04 |
| Zm00001d032239_P001 | Maize | plastid | 43.9 | 27.98 |
| EES15017 | Sorghum | nucleus | 44.72 | 27.78 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 42.28 | 27.51 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 39.84 | 26.63 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 28.46 | 25.74 |
| Os09t0402100-01 | Rice | nucleus | 43.9 | 25.35 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 30.89 | 24.2 |
| CDY09432 | Canola | nucleus | 37.4 | 23.96 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 44.72 | 21.15 |
| CDY48811 | Canola | mitochondrion, nucleus | 34.96 | 17.48 |
| VIT_17s0000g02550.t01 | Wine grape | nucleus | 41.46 | 14.37 |
| Zm00001d020412_P001 | Maize | cytosol | 35.77 | 14.33 |
| EER98875 | Sorghum | nucleus | 35.77 | 13.54 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.2 | InterPro:AT_hook_DNA-bd_motif | ProteinID:CCB43831 | ProteinID:CCB43831.1 | UniProt:F6GV49 |
| EMBL:FN594952 | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 |
| PFAM:PF00538 | PRINTS:PR00929 | PRINTS:PR00930 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 |
| SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI000210979D | ArrayExpress:VIT_15s0021g02830 | EnsemblPlantsGene:VIT_15s0021g02830 | EnsemblPlants:VIT_15s0021g02830.t01 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr15:+:13861839..13862366
Molecular Weight (calculated)
13126.9 Da
IEP (calculated)
11.288
GRAVY (calculated)
-0.815
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIEALNDK SGSSKSSISK HIELAHGGLP AAHSTLLAHH LNRMKQNGDP VMVRNHCMKP DPNAPPRKGR GRPPEPEVPF PPGTVLTPPR PSCHPLKPRN
101: PYALVSPPKK VSSGSGKPRG RPP
101: PYALVSPPKK VSSGSGKPRG RPP
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.