Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 44.6 | 45.26 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 28.78 | 44.94 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 52.52 | 41.71 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 41.01 | 41.61 |
| Solyc11g011160.1.1 | Tomato | nucleus | 43.88 | 38.12 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 43.88 | 37.89 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 43.88 | 37.89 |
| PGSC0003DMT400040569 | Potato | nucleus | 43.17 | 37.5 |
| KRH72989 | Soybean | nucleus | 46.76 | 36.93 |
| KRH72991 | Soybean | nucleus | 46.04 | 36.36 |
| KRG97935 | Soybean | nucleus | 47.48 | 36.26 |
| Zm00001d050368_P001 | Maize | nucleus | 47.48 | 36.07 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 44.6 | 35.84 |
| Os08t0428800-00 | Rice | nucleus | 45.32 | 35.39 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 46.76 | 35.33 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 46.04 | 35.16 |
| KRH30939 | Soybean | nucleus | 46.04 | 34.78 |
| KRH17355 | Soybean | nucleus | 43.88 | 34.66 |
| KRH17357 | Soybean | nucleus | 43.88 | 34.66 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 30.22 | 34.15 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 46.04 | 33.86 |
| Zm00001d032239_P001 | Maize | plastid | 46.76 | 33.68 |
| EES15017 | Sorghum | nucleus | 47.48 | 33.33 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 45.32 | 33.33 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 44.6 | 32.8 |
| CDY09431 | Canola | cytosol | 25.9 | 31.58 |
| PGSC0003DMT400037815 | Potato | nucleus | 38.85 | 31.58 |
| Os09t0402100-01 | Rice | nucleus | 48.2 | 31.46 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 34.53 | 30.57 |
| CDY48812 | Canola | cytosol | 28.78 | 30.3 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 36.69 | 30.0 |
| CDY04096 | Canola | nucleus | 35.25 | 29.88 |
| Solyc04g007890.2.1 | Tomato | nucleus | 38.13 | 29.61 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 28.78 | 29.41 |
| Bra017438.1-P | Field mustard | nucleus | 34.53 | 29.27 |
| AT1G14900.1 | Thale cress | nucleus | 41.73 | 28.43 |
| PGSC0003DMT400075917 | Potato | nucleus | 37.41 | 27.66 |
| CDY17659 | Canola | nucleus | 40.29 | 27.32 |
| CDY36240 | Canola | nucleus | 40.29 | 27.18 |
| Bra024870.1-P | Field mustard | nucleus | 36.69 | 26.7 |
| Solyc05g051290.2.1 | Tomato | nucleus | 38.13 | 25.24 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 46.04 | 24.62 |
| CDY09432 | Canola | nucleus | 32.37 | 23.44 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 35.25 | 22.79 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 35.25 | 22.79 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 33.09 | 21.4 |
| Zm00001d020412_P001 | Maize | cytosol | 38.13 | 17.26 |
| CDY48811 | Canola | mitochondrion, nucleus | 29.5 | 16.67 |
| EER98875 | Sorghum | nucleus | 36.69 | 15.69 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSMUA_Achr7G12540_001 | EnsemblPlants:GSMUA_Achr7P12540_001 |
| EnsemblPlants:GSMUA_Achr7T12540_001 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | UniProt:M0TGZ2 |
| PFAM:PF00538 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF49 | SMART:SM00526 | SUPFAM:SSF46785 |
| UniParc:UPI000295ADAD | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G12540_001]
Coordinates
chr7:-:10029969..10030388
Molecular Weight (calculated)
15093.8 Da
IEP (calculated)
11.534
GRAVY (calculated)
-0.149
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MILEAISALN DKNGCNKSAI SKYTETKYGN LLPSHWSLLT AHLAGMKDSG SLLFIKNNYF KPGSDAPRKP KLLPRGTILP PPRPRGRPPK PKDPLAAAVA
101: KFAAGFSRPH LGARPRPLIP LILLLLVVGL GLSRRSLSW
101: KFAAGFSRPH LGARPRPLIP LILLLLVVGL GLSRRSLSW
001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKVNFHIP QFCIRDLDFA ISDVYCA
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKVNFHIP QFCIRDLDFA ISDVYCA
Arabidopsis Description
HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.