Factsheet for GSMUA_Achr7P10310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28490_001	Banana	nucleus	42.35	52.94
KRH17355	Soybean	nucleus	48.24	46.59
KRH72989	Soybean	nucleus	48.24	46.59
KRH72991	Soybean	nucleus	47.65	46.02
KRH17357	Soybean	nucleus	47.06	45.45
GSMUA_Achr6P04240_001	Banana	nucleus	45.88	44.57
VIT_01s0011g05360.t01	Wine grape	nucleus	46.47	43.41
KRG97935	Soybean	nucleus	46.47	43.41
Solyc11g011160.1.1	Tomato	nucleus	39.41	41.88
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.53	41.61
KRH30939	Soybean	nucleus	44.71	41.3
PGSC0003DMT400040569	Potato	nucleus	37.65	40.0
Solyc04g007890.2.1	Tomato	nucleus	41.76	39.66
VIT_15s0021g02830.t01	Wine grape	nucleus	28.24	39.02
PGSC0003DMT400075917	Potato	nucleus	41.18	37.23
AT1G14900.1	Thale cress	nucleus	44.12	36.76
GSMUA_Achr7P12540_001	Banana	cytosol	30.0	36.69
Bra017438.1-P	Field mustard	nucleus	34.71	35.98
PGSC0003DMT400037815	Potato	nucleus	34.71	34.5
CDY09431	Canola	cytosol	21.76	32.46
CDY04096	Canola	nucleus	31.18	32.32
CDY17659	Canola	nucleus	38.82	32.2
GSMUA_Achr5P05890_001	Banana	cytosol	48.82	31.92
CDY36240	Canola	nucleus	38.24	31.55
Bra024870.1-P	Field mustard	nucleus	35.29	31.41
Solyc05g051290.2.1	Tomato	nucleus	37.65	30.48
VIT_15s0024g01410.t01	Wine grape	plastid	34.71	27.44
VIT_09s0018g01850.t01	Wine grape	plastid	34.12	26.98
CDY48812	Canola	cytosol	20.59	26.52
VIT_13s0074g00560.t01	Wine grape	plastid	33.53	26.51
CDY09432	Canola	nucleus	27.06	23.96
CDY48811	Canola	mitochondrion, nucleus	28.24	19.51

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSMUA_Achr7G10310_001
EnsemblPlants:GSMUA_Achr7P10310_001	EnsemblPlants:GSMUA_Achr7T10310_001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388
UniProt:M0TGB9	PFAM:PF00538	PFAM:PF02178	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467
PANTHER:PTHR11467:SF49	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI000295A695	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

Putative HMG-Y-related protein A [Source:GMGC_GENE;Acc:GSMUA_Achr7G10310_001]

Coordinates

chr7:+:8332880..8333672

Molecular Weight (calculated)

18359.0 Da

IEP (calculated)

11.129

GRAVY (calculated)

-0.788

Length

170 amino acids

Sequence
(BLAST)

001: MSTEEDPRTH PLPPYPEMIL TAVSAFGEDN GTSESAISEY IETSHSGQLP PSHPSLLAAH LARMTETGEL ILVDGGYLRS CPDTAPPPIK RGRGRPPKAK
101: IPVPADAAPR RRGRPPKPAD PLAPAKIPRP RGRPRKNAPS DAAPRQAGLA KRPRGRPPKV RTQFREVGFV

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.