Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09431 | Canola | cytosol | 29.27 | 63.16 |
| CDY48812 | Canola | cytosol | 27.24 | 50.76 |
| CDY04096 | Canola | nucleus | 31.3 | 46.95 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 14.63 | 40.45 |
| CDY17659 | Canola | nucleus | 32.11 | 38.54 |
| CDY36240 | Canola | nucleus | 32.11 | 38.35 |
| Solyc04g007890.2.1 | Tomato | nucleus | 26.83 | 36.87 |
| AT1G14900.1 | Thale cress | nucleus | 29.67 | 35.78 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 26.42 | 35.71 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 19.51 | 35.04 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 17.48 | 34.96 |
| PGSC0003DMT400075917 | Potato | nucleus | 26.42 | 34.57 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 21.54 | 32.92 |
| Os08t0428800-00 | Rice | nucleus | 22.76 | 31.46 |
| CDY09432 | Canola | nucleus | 24.39 | 31.25 |
| Zm00001d050368_P001 | Maize | nucleus | 23.17 | 31.15 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 20.33 | 31.06 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 17.07 | 30.88 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 21.95 | 30.86 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 21.14 | 30.06 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 16.67 | 29.5 |
| Zm00001d032239_P001 | Maize | plastid | 22.36 | 28.5 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 19.51 | 28.24 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.45 | 27.74 |
| EES15017 | Sorghum | nucleus | 21.54 | 26.77 |
| Os09t0402100-01 | Rice | nucleus | 23.17 | 26.76 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 19.92 | 26.63 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 19.92 | 25.93 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 19.92 | 25.93 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 19.51 | 25.4 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 20.73 | 23.72 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 24.8 | 23.46 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 20.33 | 23.26 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 19.92 | 22.79 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 13.82 | 21.66 |
| Zm00001d020412_P001 | Maize | cytosol | 19.92 | 15.96 |
| CDY67892 | Canola | nucleus | 16.67 | 14.04 |
| EER98875 | Sorghum | nucleus | 17.89 | 13.54 |
| CDX95791 | Canola | nucleus | 17.07 | 12.96 |
| CDX93685 | Canola | nucleus | 17.89 | 10.73 |
| CDX95794 | Canola | nucleus | 17.89 | 10.4 |
| CDY40600 | Canola | nucleus | 18.29 | 10.11 |
| CDY04315 | Canola | nucleus, plastid | 18.29 | 9.96 |
| CDY18486 | Canola | nucleus | 18.7 | 9.7 |
| CDX92189 | Canola | nucleus | 16.67 | 9.58 |
| CDX95560 | Canola | plastid | 17.48 | 8.74 |
| CDY59682 | Canola | nucleus, plastid | 18.29 | 7.49 |
| CDX92188 | Canola | nucleus | 15.04 | 7.39 |
| CDX75957 | Canola | nucleus | 16.67 | 6.66 |
| CDY51930 | Canola | nucleus | 16.67 | 6.63 |
Protein Annotations
| MapMan:35.1 | GO:A0A078IFL0 | UniProt:A0A078IFL0 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY48811 | ProteinID:CDY48811 |
| ProteinID:CDY48811.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00091740001 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 |
| PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF49 | SMART:SM00526 | SUPFAM:SSF46785 |
| UniParc:UPI0004EE7B5B | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaC02g34030DBnaC02g34030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFL0]
Coordinates
chrLK032793:-:82373..83765
Molecular Weight (calculated)
27743.6 Da
IEP (calculated)
10.332
GRAVY (calculated)
-0.403
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFFVTWLES LYSKSPRLAQ TQYAGFGNHF KCHSGLLRAF HSVYGQTRVV LVRWGTFATT PLVNLRFAQT LSPDLMISTR KIFLISFSMK RVELKAAEQY
101: SFFPCPVFDV RMENGVDLQQ TPTDDHPPQL QELPFSLPPY PQMIMDAIEA TNGCNKTAIV KHIDSTQITL PPSHLTLLNY HLNWMKQSGQ IVIVKNNYMK
201: PNPNAPPNRG RGRPPKPKPE GDSSHVAVVP APTPRPRGRP SKSKDS
101: SFFPCPVFDV RMENGVDLQQ TPTDDHPPQL QELPFSLPPY PQMIMDAIEA TNGCNKTAIV KHIDSTQITL PPSHLTLLNY HLNWMKQSGQ IVIVKNNYMK
201: PNPNAPPNRG RGRPPKPKPE GDSSHVAVVP APTPRPRGRP SKSKDS
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.