CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018744.1-P	Field mustard	nucleus	91.22	92.35
CDY40600	Canola	nucleus	75.12	69.21
CDY04315	Canola	nucleus, plastid	57.56	52.21
AT1G48620.1	Thale cress	nucleus	54.63	46.76
CDY59682	Canola	nucleus, plastid	51.95	35.44
CDY04096	Canola	nucleus	14.15	35.37
CDY18486	Canola	nucleus	40.73	35.23
CDX95560	Canola	plastid	41.95	34.96
CDY17659	Canola	nucleus	17.07	34.15
CDY36240	Canola	nucleus	17.07	33.98
CDY09431	Canola	cytosol	9.27	33.33
VIT_17s0000g02550.t01	Wine grape	nucleus	28.29	32.68
KRH60528	Soybean	nucleus	29.76	31.85
KRH72147	Soybean	cytosol	11.95	31.82
KRG88430	Soybean	nucleus	18.29	31.25
CDY48812	Canola	cytosol	10.0	31.06
KRH41804	Soybean	nucleus	30.24	30.02
KRG94697	Soybean	cytosol	13.17	30.0
CDY09432	Canola	nucleus	13.17	28.12
KRH39095	Soybean	nucleus	29.27	24.14
CDX75957	Canola	nucleus	34.63	23.05
CDX92189	Canola	nucleus	22.93	21.96
PGSC0003DMT400014700	Potato	extracellular, nucleus	28.05	21.82
CDY67892	Canola	nucleus	15.37	21.58
CDX95791	Canola	nucleus	16.59	20.99
CDX92188	Canola	nucleus	25.61	20.96
CDX95794	Canola	nucleus	21.22	20.57
Solyc03g119130.2.1	Tomato	nucleus	25.85	20.46
CDY51930	Canola	nucleus	27.32	18.12
CDY48811	Canola	mitochondrion, nucleus	10.73	17.89

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078DWJ1	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDX93685	ProteinID:CDX93685
ProteinID:CDX93685.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00156373001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818
InterPro:IPR036388	PFAM:PF00538	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29
SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EE6532	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaA06g03630D

Coordinates

chrLK031876:-:1309844..1312085

Molecular Weight (calculated)

44299.7 Da

IEP (calculated)

10.698

GRAVY (calculated)

-0.803

Length

410 amino acids

Sequence
(BLAST)

001: MDPSLSAPND PHHSPPFPFS VHHHPFYTNN NNNNNNQFYQ PQPNPTWVHP PYSEMICCAI AALNEAEGSS KQAISRYIER TYTGIPPAHG ALMTHHLKSL
101: KNSGVLVMVK KSYKLAPEPP RSDFTSNNSV IQTQPLPDLA PTASQKRGRG RPPKPKPDAA QTNGVPQEQI LSLPPPQTVV KRPPGRPRKD GALPTVKTPV
201: EAAKRRGRPP SGRAVGRERK PAVVSAPASV IPYVPNGGVR RRGRPKRVDA GASAPKAEGG GSGSVVVAKR GRGRPPKVGG VVRKPMKPKR GGYVRTGRPL
301: GRPRKNAAAK GASRQQDIGY GELQKKFELF QEKAKEIVNV LKAEVGGSGN HAVVQAIQAL EELTVTTTEE PTHMEVVQPD EQHPGNEQEL EGHGQGQAQT
401: EAEAMQEALF

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.