CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88430	Soybean	nucleus	28.17	58.33
KRH72147	Soybean	cytosol	14.89	48.05
KRG94697	Soybean	cytosol	17.3	47.78
KRH41804	Soybean	nucleus	36.02	43.34
KRH60528	Soybean	nucleus	33.2	43.08
KRH72991	Soybean	nucleus	14.49	40.91
KRH17357	Soybean	nucleus	14.49	40.91
KRH17355	Soybean	nucleus	14.49	40.91
KRH72989	Soybean	nucleus	14.29	40.34
KRG97935	Soybean	nucleus	13.68	37.36
VIT_17s0000g02550.t01	Wine grape	nucleus	26.16	36.62
KRH30939	Soybean	nucleus	13.48	36.41
Bra018744.1-P	Field mustard	nucleus	24.35	29.88
CDX93685	Canola	nucleus	24.14	29.27
CDY04315	Canola	nucleus, plastid	24.75	27.21
CDY40600	Canola	nucleus	24.35	27.19
AT1G48620.1	Thale cress	nucleus	23.94	24.84
Bra021288.1-P	Field mustard	nucleus	22.54	24.62
CDY18486	Canola	nucleus	23.34	24.47
AT3G18035.1	Thale cress	nucleus	22.94	23.75
PGSC0003DMT400014700	Potato	extracellular, nucleus	24.95	23.53
CDX95560	Canola	plastid	23.14	23.37
Solyc03g119130.2.1	Tomato	nucleus	24.14	23.17
CDY59682	Canola	nucleus, plastid	25.35	20.97
Bra032258.1-P	Field mustard	nucleus, plastid	24.95	20.56
CDY67892	Canola	nucleus	11.47	19.52
Bra022273.1-P	Field mustard	nucleus	19.32	19.05
CDX92188	Canola	nucleus	18.91	18.76
CDX92189	Canola	nucleus	15.69	18.22
CDX95791	Canola	nucleus	11.87	18.21
CDX75957	Canola	nucleus	22.54	18.18
Bra022274.1-P	Field mustard	nucleus	16.3	18.12
CDX95794	Canola	nucleus	14.69	17.26
Bra001696.1-P	Field mustard	nucleus	19.92	16.02
CDY51930	Canola	nucleus	19.92	16.02

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	EMBL:ACUP02005914	InterPro:AT_hook_DNA-bd_motif	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G177500
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:Histone_H1/H5_H15	InterPro:Histone_H5	UniProt:I1L467	InterPro:IPR005818
InterPro:IPR036388	EnsemblPlants:KRH39095	ProteinID:KRH39095	ProteinID:KRH39095.1	PFAM:PF00538	PRINTS:PR00624
PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00384	SMART:SM00526
SUPFAM:SSF46785	UniParc:UPI000295E411	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:40196160..40201977

Molecular Weight (calculated)

53395.6 Da

IEP (calculated)

11.066

GRAVY (calculated)

-0.872

Length

497 amino acids

Sequence
(BLAST)

001: MEPSSISPPP APPATAVPFP AEPNDHLPPP IPEPPSNHPP YAEMIYTAIE ALKEKDGSSK RAIAKYIEQV YTQLPPNHSD LLTQHLNHLK SRGLLQMVKK
101: SYALPRSVPV SVPGPAPTQG TSAVPAAVVA ITTTPRPRGR PRKAQNPVQN SPLPQDTPVG AALGLADEPV QAEGSGKKRG RPKKSGILGA GLTKRGRPPG
201: SGKKPGRPPK ATTTDVSASA GPKRRPGRPP KNQSQPTLIP FAPAVSAASV DTEHVAASAE TAPVDADAAL GPRARGRPKK YADEMIAAGR GRGRGRGRGG
301: GGRGRGRGRG ELPAQPRKPG ARPVGRPKKG STSASTSQNA ANEDLRRKLE HFQSKVKESL AVLKPHFNHE SPVTAIAAIQ ELEVLGTMDL NVPLRDETLP
401: HQVELPPPQP PVQQQQQPPQ QQLQQPPQQP PQQHLAPQQL PPQPPIFQQT YPPFHLPQFH HHQPSLQFQQ QQQQPPQPPP QLFQHQAQPP SHQQFHP

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.