CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72147	Soybean	cytosol	40.0	46.75
KRG88430	Soybean	nucleus	41.11	30.83
KRH17355	Soybean	nucleus	23.89	24.43
KRH30939	Soybean	nucleus	24.44	23.91
KRH17357	Soybean	nucleus	23.33	23.86
KRH72991	Soybean	nucleus	22.78	23.3
KRH72989	Soybean	nucleus	22.78	23.3
KRG97935	Soybean	nucleus	23.33	23.08
KRH60528	Soybean	nucleus	37.22	17.49
KRH39095	Soybean	nucleus	47.78	17.3
KRH41804	Soybean	nucleus	37.78	16.46
VIT_17s0000g02550.t01	Wine grape	nucleus	27.78	14.08
CDY67892	Canola	nucleus	22.78	14.04
CDX95791	Canola	nucleus	25.0	13.89
CDX93685	Canola	nucleus	30.0	13.17
Bra018744.1-P	Field mustard	nucleus	29.44	13.09
CDY04315	Canola	nucleus, plastid	32.78	13.05
CDY40600	Canola	nucleus	30.0	12.13
AT1G48620.1	Thale cress	nucleus	31.67	11.9
AT3G18035.1	Thale cress	nucleus	30.0	11.25
Bra021288.1-P	Field mustard	nucleus	28.33	11.21
PGSC0003DMT400014700	Potato	extracellular, nucleus	32.78	11.2
Solyc03g119130.2.1	Tomato	nucleus	31.67	11.0
CDY18486	Canola	nucleus	27.78	10.55
CDX95560	Canola	plastid	28.33	10.37
CDX92189	Canola	nucleus	23.89	10.05
Bra022274.1-P	Field mustard	nucleus	24.44	9.84
CDY59682	Canola	nucleus, plastid	31.67	9.48
CDX95794	Canola	nucleus	22.22	9.46
Bra032258.1-P	Field mustard	nucleus, plastid	31.67	9.45
Bra022273.1-P	Field mustard	nucleus	25.56	9.13
CDX92188	Canola	nucleus	25.0	8.98
CDX75957	Canola	nucleus	25.0	7.31
Bra001696.1-P	Field mustard	nucleus	25.0	7.28
CDY51930	Canola	nucleus	25.0	7.28

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	UniProt:A0A0R0EKB5	EMBL:ACUP02012016	EnsemblPlantsGene:GLYMA_19G102900	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	EnsemblPlants:KRG94697	ProteinID:KRG94697
ProteinID:KRG94697.1	PFAM:PF00538	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00526
SUPFAM:SSF46785	UniParc:UPI0006ED5530	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:35097953..35099857

Molecular Weight (calculated)

19614.9 Da

IEP (calculated)

10.650

GRAVY (calculated)

-0.267

Length

180 amino acids

Sequence
(BLAST)

001: MIYTAIEALK EKDGSSKRAI AKYIEQVYTQ LPPNHSNLLT QHLTHLKSRG LLQMVKKSYA LPRSVPVSVP GPAPTEGTST VPTVVVAITT TPRPRGRPRK
101: AQNPVQNSPL AQDTVNVQVQ QNAEPVWAAL GLADEIGKSK LFEYLRLTTV GVIGASNRTP ELLKMNPIGK VHFACSRLTT

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.