CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60528	Soybean	nucleus	59.08	63.71
KRG88430	Soybean	nucleus	23.97	41.25
KRH72147	Soybean	cytosol	15.25	40.91
KRH72991	Soybean	nucleus	16.46	38.64
KRH17357	Soybean	nucleus	16.22	38.07
KRG94697	Soybean	cytosol	16.46	37.78
KRH72989	Soybean	nucleus	15.98	37.5
KRH17355	Soybean	nucleus	15.98	37.5
VIT_17s0000g02550.t01	Wine grape	nucleus	32.2	37.46
KRG97935	Soybean	nucleus	16.46	37.36
KRH39095	Soybean	nucleus	43.34	36.02
KRH30939	Soybean	nucleus	15.74	35.33
Bra018744.1-P	Field mustard	nucleus	29.78	30.37
CDX93685	Canola	nucleus	30.02	30.24
CDY04315	Canola	nucleus, plastid	30.27	27.65
CDY40600	Canola	nucleus	28.09	26.07
Bra021288.1-P	Field mustard	nucleus	28.57	25.93
AT3G18035.1	Thale cress	nucleus	29.54	25.42
CDY18486	Canola	nucleus	28.81	25.11
AT1G48620.1	Thale cress	nucleus	28.09	24.22
CDX95560	Canola	plastid	28.81	24.19
PGSC0003DMT400014700	Potato	extracellular, nucleus	28.81	22.58
Solyc03g119130.2.1	Tomato	nucleus	27.84	22.2
CDY59682	Canola	nucleus, plastid	30.02	20.63
Bra032258.1-P	Field mustard	nucleus, plastid	29.06	19.9
CDY67892	Canola	nucleus	12.83	18.15
CDX95794	Canola	nucleus	18.16	17.73
CDX75957	Canola	nucleus	26.39	17.69
CDX95791	Canola	nucleus	13.8	17.59
CDX92189	Canola	nucleus	17.68	17.06
Bra022274.1-P	Field mustard	nucleus	18.4	17.0
Bra022273.1-P	Field mustard	nucleus	20.58	16.87
CDX92188	Canola	nucleus	20.34	16.77
Bra001696.1-P	Field mustard	nucleus	20.58	13.75
CDY51930	Canola	nucleus	20.58	13.75

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	EntrezGene:547676	EMBL:ACUP02004781	EMBL:AJ319868	InterPro:AT_hook_DNA-bd_motif
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G052600	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Histone_H1/H5_H15	InterPro:Histone_H5
InterPro:IPR005818	InterPro:IPR036388	EnsemblPlants:KRH41804	ProteinID:KRH41804	ProteinID:KRH41804.1	PFAM:PF00538
PRINTS:PR00624	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	UniProt:Q93YH8
SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI000009DE66	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:4076039..4079148

Molecular Weight (calculated)

44255.6 Da

IEP (calculated)

11.549

GRAVY (calculated)

-0.683

Length

413 amino acids

Sequence
(BLAST)

001: MDPTSIPPPP ATTVPFTVEP SNHVTPADNT NTNHPPYDEM IYTAIGALKE KDGSSKRAIG KYMEQVYKDL PPTHSALLTH HLNRLKSAGL LILVKKSYKL
101: PGSDPLPVLQ AQKPRGRPPK LKSQPNTELT WPALALNDNP ALQSAKRGPG RPKKIAGPVG VSPGPMVPGR RGRPPGTGRS KLPKRPGRPP KPKSVSAISS
201: GLKRRPGRPP KAESNVNVIP FAAPVAPGLP TVQPIVPTAS VPNGSPRPRG RPKKIVAGAG APALSSVGGA PRGRGRPRGV LPLVRPGRPQ KLAVGRPKNP
301: ARRPVGRPKG STAAAITAHK AANDDLRRKL EHFQSKVKES LGTLKPYFNH ESPVTAIAAI QELEVLSTLD LKAPLRDETH QQPQPQPQVY EQQYPQPQPL
401: LQQFFQPHTS APS

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.