Factsheet for PGSC0003DMT400014700

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119130.2.1	Tomato	nucleus	71.35	72.59
PGSC0003DMT400040569	Potato	nucleus	10.82	35.62
PGSC0003DMT400075917	Potato	nucleus	12.14	34.04
KRH72147	Soybean	cytosol	9.68	33.12
KRG88430	Soybean	nucleus	14.99	32.92
KRG94697	Soybean	cytosol	11.2	32.78
VIT_17s0000g02550.t01	Wine grape	nucleus	21.82	32.39
KRH60528	Soybean	nucleus	21.82	30.03
PGSC0003DMT400037815	Potato	nucleus	9.49	29.24
KRH41804	Soybean	nucleus	22.58	28.81
Bra018744.1-P	Field mustard	nucleus	21.63	28.15
CDX93685	Canola	nucleus	21.82	28.05
CDY04315	Canola	nucleus, plastid	22.96	26.77
Bra021288.1-P	Field mustard	nucleus	22.58	26.15
CDY40600	Canola	nucleus	21.82	25.84
KRH39095	Soybean	nucleus	23.53	24.95
CDY18486	Canola	nucleus	22.39	24.89
CDX95560	Canola	plastid	22.96	24.59
AT3G18035.1	Thale cress	nucleus	22.2	24.38
AT1G48620.1	Thale cress	nucleus	21.63	23.8
CDY67892	Canola	nucleus	11.2	20.21
CDX95791	Canola	nucleus	11.39	18.52
CDY59682	Canola	nucleus, plastid	20.87	18.3
Bra032258.1-P	Field mustard	nucleus, plastid	20.68	18.08
CDX75957	Canola	nucleus	21.06	18.02
CDX95794	Canola	nucleus	14.23	17.73
Bra022273.1-P	Field mustard	nucleus	16.7	17.46
CDX92188	Canola	nucleus	16.13	16.97
CDX92189	Canola	nucleus	13.47	16.59
Bra022274.1-P	Field mustard	nucleus	13.66	16.11
CDY51930	Canola	nucleus	18.03	15.37
Bra001696.1-P	Field mustard	nucleus	17.84	15.21

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	ncoils:Coil	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	UniProt:M1A4R1	PFAM:PF00538	EnsemblPlantsGene:PGSC0003DMG400005735	PGSC:PGSC0003DMG400005735
EnsemblPlants:PGSC0003DMT400014700	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00384
SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI000296970C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005735]

Coordinates

chr3:+:58608229..58613646

Molecular Weight (calculated)

55585.6 Da

IEP (calculated)

10.741

GRAVY (calculated)

-0.708

Length

527 amino acids

Sequence
(BLAST)

001: MDLPMDIEQP TFNPPQLVNH DLPPPPPPQD PTLAPDFSSP QPDYAELITG AITALNEKEG SSRVAIAKYI DRVHSNLPPN HSALLTHHLK RLKNSGYLAM
101: VKHSYLLAAP GSAPPPPEAA AVDSNGGDAT PLTKRKPGRP PKSKPEAQPQ AQYQDPFQGA QIQAQQQQQA QFQPQFQTHP QFVPQPQFQP FQADPLLQNQ
201: FHFQSQQQPQ GFAAPHEAQN YTNLGAESVF VSLGLADGPV GVQNPGGSVP LPAGTPVPAL EGSNIKRRAG RPRKDGSTVV KSLETKSPEQ SGTKRRPGRP
301: AKTGTVNAAP GSAVASSKPR GRPKKGSTPG RRGRPRKNVA ANVGVNAANI PAGNPNIPVG GDPTAQTPTH KRRGRPAKSN NQGGPAAASV GVTDVPIAAA
401: FDSEGFPNTV GGVTNGATPL GKRRGRPPKS YSSPAVASTV KRARKLSGRP LGRPKKNVTS PAVSDPKLVV AYEDLKGKLE NMQSRIREAA NALRPCLNAE
501: TPATALAAFQ ELEELAGPAG VDPMHQN

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.