Factsheet for AT1G48620.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018744.1-P	Field mustard	nucleus	47.18	55.8
CDY40600	Canola	nucleus	51.57	55.51
CDX93685	Canola	nucleus	46.76	54.63
CDY04315	Canola	nucleus, plastid	46.35	49.12
AT3G18035.1	Thale cress	nucleus	37.79	37.71
Bra032258.1-P	Field mustard	nucleus, plastid	44.68	35.49
CDY59682	Canola	nucleus, plastid	44.26	35.27
KRH72147	Soybean	cytosol	11.06	34.42
VIT_17s0000g02550.t01	Wine grape	nucleus	25.26	34.08
KRG88430	Soybean	nucleus	16.28	32.5
AT1G14900.1	Thale cress	nucleus	13.78	32.35
KRH60528	Soybean	nucleus	25.47	31.85
KRG94697	Soybean	cytosol	11.9	31.67
KRH41804	Soybean	nucleus	24.22	28.09
KRH39095	Soybean	nucleus	24.84	23.94
PGSC0003DMT400014700	Potato	extracellular, nucleus	23.8	21.63
Solyc03g119130.2.1	Tomato	nucleus	23.38	21.62

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	EntrezGene:841283	ProteinID:AEE32328.1	ArrayExpress:AT1G48620	EnsemblPlantsGene:AT1G48620
RefSeq:AT1G48620	TAIR:AT1G48620	RefSeq:AT1G48620-TAIR-G	EnsemblPlants:AT1G48620.1	TAIR:AT1G48620.1	InterPro:AT_hook_DNA-bd_motif
EMBL:BT023425	EMBL:BT025318	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005730	GO:GO:0005737	GO:GO:0006334	GO:GO:0008150	GO:GO:0009294	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	InterPro:HMGA_plant
Symbol:HON5	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	RefSeq:NP_175295.1	PFAM:PF00538
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	UniProt:Q4V3D1	SMART:SM00384
SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI00001630B1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]

Coordinates

chr1:-:17973642..17976663

Molecular Weight (calculated)

51394.3 Da

IEP (calculated)

10.448

GRAVY (calculated)

-0.692

Length

479 amino acids

Sequence
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.