Factsheet for Bra018744.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93685	Canola	nucleus	92.35	91.22
AT1G48620.1	Thale cress	nucleus	55.8	47.18
Bra021288.1-P	Field mustard	nucleus	41.48	36.92
Bra032258.1-P	Field mustard	nucleus, plastid	52.84	35.49
Bra017438.1-P	Field mustard	nucleus	14.07	34.76
Bra024870.1-P	Field mustard	nucleus	15.56	32.98
VIT_17s0000g02550.t01	Wine grape	nucleus	28.89	32.96
KRH60528	Soybean	nucleus	30.12	31.85
KRH72147	Soybean	cytosol	12.1	31.82
KRG88430	Soybean	nucleus	18.27	30.83
KRH41804	Soybean	nucleus	30.37	29.78
KRG94697	Soybean	cytosol	13.09	29.44
KRH39095	Soybean	nucleus	29.88	24.35
PGSC0003DMT400014700	Potato	extracellular, nucleus	28.15	21.63
Bra022273.1-P	Field mustard	nucleus	26.67	21.43
Bra022274.1-P	Field mustard	nucleus	23.46	21.25
Solyc03g119130.2.1	Tomato	nucleus	25.93	20.27
Bra001696.1-P	Field mustard	nucleus	28.15	18.45

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra018744	EnsemblPlants:Bra018744.1	EnsemblPlants:Bra018744.1-P
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006334
GO:GO:0008150	GO:GO:0009294	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043
InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	UniProt:M4DQF1	PFAM:PF00538
PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00384	SMART:SM00526
SUPFAM:SSF46785	UniParc:UPI000253ECD5	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

AT1G48620 (E=2e-042) HON5 | HON5 (High Mobility Group Family A 5); DNA binding

Coordinates

chrA06:+:2228846..2230661

Molecular Weight (calculated)

43909.3 Da

IEP (calculated)

10.649

GRAVY (calculated)

-0.835

Length

405 amino acids

Sequence
(BLAST)

001: MDPSLSAPND PHHSPPFPFS VHHHPFYTNN NNNNNNNQFY QPQPNPTWVH PPYSEMICCA IAALNEAEGS SKQAISRYIE RTYTGIPPAH GALMTHHLKS
101: LKNSGVLVMV KKSYKLAPEP PRSDFNQTQP LPDLAPTASQ KRGRGRPPKP KPDVLQTNGL PQEQILPLPP PQTVVKRPPG RPRKDGALPT VKTPVEAAKR
201: RGRPPSGRAA GRERKPAVVS APASVIPYVS NGGVRRRGRP KRVDAGASAP KAEGGGSGSV VVAKRGRGRP PKVGGVVRKP MKPKRGGYVR TGRPLGRPRK
301: NAAAKGASRQ QDIGYGELQK KFELFQEKAK EIVNVLKAEV GGSGNHAVVQ AIQALEELTV TTTEEPTHME EVQPDEQHPG NELELEGHGQ GQPQTEAEAM
401: QEALF

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.