Factsheet for Bra021288.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18486	Canola	nucleus	86.37	82.91
Bra018744.1-P	Field mustard	nucleus	36.92	41.48
VIT_17s0000g02550.t01	Wine grape	nucleus	24.18	30.99
KRH72147	Soybean	cytosol	10.33	30.52
KRH60528	Soybean	nucleus	25.49	30.29
KRG88430	Soybean	nucleus	15.6	29.58
KRH41804	Soybean	nucleus	25.93	28.57
KRG94697	Soybean	cytosol	11.21	28.33
Bra017438.1-P	Field mustard	nucleus	10.11	28.05
Bra032258.1-P	Field mustard	nucleus, plastid	36.7	27.69
Bra024870.1-P	Field mustard	nucleus	11.43	27.23
Bra022274.1-P	Field mustard	nucleus	25.49	25.95
Bra022273.1-P	Field mustard	nucleus	25.71	23.21
PGSC0003DMT400014700	Potato	extracellular, nucleus	26.15	22.58
KRH39095	Soybean	nucleus	24.62	22.54
Bra001696.1-P	Field mustard	nucleus	30.33	22.33
Solyc03g119130.2.1	Tomato	nucleus	25.27	22.2

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra021288	EnsemblPlants:Bra021288.1	EnsemblPlants:Bra021288.1-P
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	UniProt:M4DXP2	PFAM:PF00538
PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00384	SMART:SM00526
SUPFAM:SSF46785	UniParc:UPI0002545225	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

AT3G18035 (E=2e-030) HON4 | HON4; DNA binding

Coordinates

chrA01:+:22760269..22762348

Molecular Weight (calculated)

48556.5 Da

IEP (calculated)

10.437

GRAVY (calculated)

-0.731

Length

455 amino acids

Sequence
(BLAST)

001: MDPSLSSDPH RPQQYSPFPQ YPPSNSPFVS APNLPFYGVN QTPFNTHLIV EAIAHLNEPE GSSKMAISRY IERSNPVLPT DHQALLAHHL KTLKNCGVLS
101: MVKKSYKLAA SSSAPESVAV AAAAAAAGLA PPPPRSESPL DPAPLSASQP QKRGRGRPPK PKPEASPQQQ QQLIIAQPNA VQLNGQPSWE QPQFPVPSPT
201: QTGTESAKRG PGRPRKDGSA PIPRPAGMSV IMKRRGRPPG RRAAGRQRKP LSVSSTASVF PYVANGARRR GRPRRVDSGG VPVAAPAGGE AVAAAPGIKR
301: GRGRPPKIGG VKNRLITKPK RGRGRPVGRP RKNPWPVTVA TGALESAYGE LKAKLDLYNE KAKEILNVLN TGITSNDNQA AVEAAQKLEG LISMMTVEPQ
401: AVEEAQPEEA APQTEAEEPQ EGEGHGQERE GEEEQAPTDQ TQVQTDAEAM QEALF

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.