CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41804	Soybean	nucleus	63.71	59.08
KRH72147	Soybean	cytosol	16.71	41.56
KRH17355	Soybean	nucleus	18.54	40.34
KRH72991	Soybean	nucleus	18.28	39.77
KRH72989	Soybean	nucleus	18.28	39.77
KRH17357	Soybean	nucleus	18.28	39.77
KRG97935	Soybean	nucleus	18.8	39.56
VIT_17s0000g02550.t01	Wine grape	nucleus	34.99	37.75
KRH30939	Soybean	nucleus	18.02	37.5
KRG94697	Soybean	cytosol	17.49	37.22
KRG88430	Soybean	nucleus	22.19	35.42
KRH39095	Soybean	nucleus	43.08	33.2
Bra018744.1-P	Field mustard	nucleus	31.85	30.12
CDX93685	Canola	nucleus	31.85	29.76
CDY40600	Canola	nucleus	31.85	27.42
CDY04315	Canola	nucleus, plastid	32.11	27.21
AT3G18035.1	Thale cress	nucleus	32.64	26.04
Bra021288.1-P	Field mustard	nucleus	30.29	25.49
AT1G48620.1	Thale cress	nucleus	31.85	25.47
CDY18486	Canola	nucleus	31.07	25.11
CDX95560	Canola	plastid	32.11	25.0
Solyc03g119130.2.1	Tomato	nucleus	30.03	22.2
PGSC0003DMT400014700	Potato	extracellular, nucleus	30.03	21.82
CDY67892	Canola	nucleus	15.4	20.21
Bra032258.1-P	Field mustard	nucleus, plastid	31.59	20.07
CDY59682	Canola	nucleus, plastid	31.33	19.97
CDX95791	Canola	nucleus	16.71	19.75
CDX92189	Canola	nucleus	20.89	18.69
Bra022274.1-P	Field mustard	nucleus	21.15	18.12
CDX75957	Canola	nucleus	28.98	18.02
CDX95794	Canola	nucleus	19.06	17.26
Bra022273.1-P	Field mustard	nucleus	22.45	17.06
CDX92188	Canola	nucleus	21.67	16.57
Bra001696.1-P	Field mustard	nucleus	23.76	14.72
CDY51930	Canola	nucleus	23.76	14.72

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100802941	MapMan:35.2	EMBL:ACUP02003367	InterPro:AT_hook_DNA-bd_motif	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G245500	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Histone_H1/H5_H15	UniProt:I1K5C7	InterPro:IPR005818
InterPro:IPR036388	EnsemblPlants:KRH60528	ProteinID:KRH60528	ProteinID:KRH60528.1	PFAM:PF00538	PRINTS:PR00929
PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785
UniParc:UPI000233A9BA	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:41945440..41948540

Molecular Weight (calculated)

41247.2 Da

IEP (calculated)

11.919

GRAVY (calculated)

-0.685

Length

383 amino acids

Sequence
(BLAST)

001: MAISFSPKHP PYDEMIYTAI GALKERDGSS KRAIGKYIEQ VYKDLPPTHP ALLTHHLNRL KSSALLVLVK KSYKLPGSHH LPALQPQKTR GRPPKPKPHP
101: VWPAAALTDS PALLSAKRGP GRPKKIGVSP PGPRGRPPGT GRSKLPKRPG RPPKPKSVSA ISSGLKRRPG RPPKAQSNVN VIPFAAPVAP GLPTVQPILP
201: TASVPNGSPR PRGRPKKSFT AAGAPALSAV AGAARGRGRG RPRGVFPVVR PGRPQKLAVG RSKNPVRRPV GRPKGSTAAA ITAHKAANED LRKKLEHFQS
301: KVKESLGTLK PYFNHESPVT AIAAIQELEV LSTLDLKAPL RDETQQQPPP LPQTQTQVYE QQYPQPQSQQ LPQFFQPHTS APS

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.