Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH72989 | Soybean | nucleus | 97.16 | 97.16 |
| KRH17357 | Soybean | nucleus | 93.18 | 93.18 |
| KRH17355 | Soybean | nucleus | 89.77 | 89.77 |
| KRG97935 | Soybean | nucleus | 64.2 | 62.09 |
| KRH30939 | Soybean | nucleus | 63.64 | 60.87 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 27.84 | 55.06 |
| PGSC0003DMT400040569 | Potato | nucleus | 48.3 | 53.12 |
| Solyc11g011160.1.1 | Tomato | nucleus | 48.3 | 53.12 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 48.3 | 52.8 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 40.91 | 52.55 |
| Os08t0428800-00 | Rice | nucleus | 52.84 | 52.25 |
| Zm00001d050368_P001 | Maize | nucleus | 53.98 | 51.91 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 46.59 | 50.93 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 49.43 | 49.71 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 48.3 | 49.13 |
| PGSC0003DMT400037815 | Potato | nucleus | 47.16 | 48.54 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.5 | 48.18 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 46.02 | 47.65 |
| Zm00001d032239_P001 | Maize | plastid | 50.57 | 46.11 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 36.36 | 46.04 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 47.73 | 45.65 |
| EES15017 | Sorghum | nucleus | 51.14 | 45.45 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 48.3 | 44.97 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 47.73 | 44.44 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 46.59 | 43.39 |
| Os09t0402100-01 | Rice | nucleus | 49.43 | 40.85 |
| Solyc05g051290.2.1 | Tomato | nucleus | 48.3 | 40.48 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 31.25 | 40.44 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 52.84 | 35.77 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 28.41 | 31.85 |
| KRH72147 | Soybean | cytosol | 24.43 | 27.92 |
| KRG88430 | Soybean | nucleus | 37.5 | 27.5 |
| Zm00001d020412_P001 | Maize | cytosol | 42.05 | 24.1 |
| EER98875 | Sorghum | nucleus | 44.32 | 24.0 |
| KRG94697 | Soybean | cytosol | 23.3 | 22.78 |
| KRH60528 | Soybean | nucleus | 39.77 | 18.28 |
| KRH41804 | Soybean | nucleus | 38.64 | 16.46 |
| KRH39095 | Soybean | nucleus | 40.91 | 14.49 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | EntrezGene:548080 | EMBL:ACUP02001260 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlantsGene:GLYMA_02G245100 |
| GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006334 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | UniProt:I1JHW6 | InterPro:IPR005818 | InterPro:IPR036388 |
| EnsemblPlants:KRH72991 | ProteinID:KRH72991 | ProteinID:KRH72991.1 | ProteinID:KRH72992.1 | PFAM:PF00538 | PRINTS:PR00929 |
| PRINTS:PR00930 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF49 | SMART:SM00384 | SMART:SM00526 |
| SUPFAM:SSF46785 | UniParc:UPI0001E23C75 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:43327594..43329339
Molecular Weight (calculated)
18812.6 Da
IEP (calculated)
11.118
GRAVY (calculated)
-1.025
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEEVNKPQ SLPPYPEMIV KALEALNEPN GSNKSAISKY IETTYGELPD ATVLGSHLNK MKDSGELSFK QNNYMKADPN APPKRGRGRP PKPKTPLPPG
101: TVVSPPRPRG RPPKDPNAPP KSPKAKATPG SGRPRGRPKK VPRSPAVAAP TAVSSGRPRG RPPKVKPQLT EVSVES
101: TVVSPPRPRG RPPKDPNAPP KSPKAKATPG SGRPRGRPKK VPRSPAVAAP TAVSSGRPRG RPPKVKPQLT EVSVES
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.