Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98875 | Sorghum | nucleus | 69.71 | 65.85 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 29.32 | 48.91 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 29.64 | 48.15 |
| Zm00001d050368_P001 | Maize | nucleus | 28.34 | 47.54 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 27.04 | 47.43 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 28.66 | 46.56 |
| Zm00001d032239_P001 | Maize | plastid | 28.34 | 45.08 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 27.69 | 44.97 |
| Os09t0402100-01 | Rice | nucleus | 30.94 | 44.6 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.22 | 43.07 |
| KRH72991 | Soybean | nucleus | 24.1 | 42.05 |
| KRH17357 | Soybean | nucleus | 24.1 | 42.05 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 24.1 | 40.66 |
| KRH72989 | Soybean | nucleus | 23.13 | 40.34 |
| Solyc11g011160.1.1 | Tomato | nucleus | 20.85 | 40.0 |
| KRH17355 | Soybean | nucleus | 22.8 | 39.77 |
| PGSC0003DMT400040569 | Potato | nucleus | 20.52 | 39.38 |
| KRH30939 | Soybean | nucleus | 23.13 | 38.59 |
| CDY17659 | Canola | nucleus | 25.73 | 38.54 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 17.26 | 38.13 |
| Solyc04g007890.2.1 | Tomato | nucleus | 21.82 | 37.43 |
| CDY36240 | Canola | nucleus | 24.76 | 36.89 |
| CDY09431 | Canola | cytosol | 13.68 | 36.84 |
| KRG97935 | Soybean | nucleus | 21.82 | 36.81 |
| PGSC0003DMT400075917 | Potato | nucleus | 22.48 | 36.7 |
| Bra017438.1-P | Field mustard | nucleus | 19.54 | 36.59 |
| CDY04096 | Canola | nucleus | 19.54 | 36.59 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 14.33 | 35.77 |
| Bra024870.1-P | Field mustard | nucleus | 22.15 | 35.6 |
| PGSC0003DMT400037815 | Potato | nucleus | 19.54 | 35.09 |
| AT1G14900.1 | Thale cress | nucleus | 22.48 | 33.82 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 27.36 | 32.31 |
| Solyc05g051290.2.1 | Tomato | nucleus | 20.2 | 29.52 |
| CDY48812 | Canola | cytosol | 11.4 | 26.52 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 18.24 | 26.05 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 17.92 | 25.58 |
| CDY09432 | Canola | nucleus | 15.96 | 25.52 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 16.94 | 24.19 |
| CDY48811 | Canola | mitochondrion, nucleus | 15.96 | 19.92 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.2 | UniProt:A0A1D6I413 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | ProteinID:ONM54880.1 | PFAM:PF00538 |
| PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 |
| SUPFAM:SSF46785 | UniParc:UPI000220CD3B | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d020412 | EnsemblPlants:Zm00001d020412_P001 |
| EnsemblPlants:Zm00001d020412_T001 | SEG:seg | : | : | : | : |
Description
HMG-Y-related protein A
Coordinates
chr7:-:112203071..112204545
Molecular Weight (calculated)
31604.6 Da
IEP (calculated)
9.896
GRAVY (calculated)
-0.416
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKDGSVPS PPPPRLPSYP EMIVEAIRAL GLENGCNKTA ISDYIKGSYG SNLPAQHNAV LTGHLARMKA TGELAFLRNN YLLPNEDEAS PLSTGGHKGP
101: AAAEESTGVL DVGDDVLLAS PLVIDADAVD IDVPAPAPVV TADVDDIDVL APAPVVSADV NPVHTKRGRG RPPKPKDPVA EGYGGKPATA PVAAAAVPVK
201: RGRGRPPKPK NPVAEDSAPT ASSVVTTDGN AVPVKRGRGR PPKLKDPINV ATDQATSGML SPRGRGRPPK KAKVAVEDPR GEPAAARDVV VDASAVHVKR
301: GRGRPPR
101: AAAEESTGVL DVGDDVLLAS PLVIDADAVD IDVPAPAPVV TADVDDIDVL APAPVVSADV NPVHTKRGRG RPPKPKDPVA EGYGGKPATA PVAAAAVPVK
201: RGRGRPPKPK NPVAEDSAPT ASSVVTTDGN AVPVKRGRGR PPKLKDPINV ATDQATSGML SPRGRGRPPK KAKVAVEDPR GEPAAARDVV VDASAVHVKR
301: GRGRPPR
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.