Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09431 | Canola | cytosol | 40.91 | 47.37 |
| CDY09432 | Canola | nucleus | 59.09 | 40.62 |
| CDY04096 | Canola | nucleus | 48.48 | 39.02 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 24.24 | 35.96 |
| CDY17659 | Canola | nucleus | 53.03 | 34.15 |
| CDY36240 | Canola | nucleus | 52.27 | 33.5 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 29.55 | 31.71 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.3 | 29.2 |
| AT1G14900.1 | Thale cress | nucleus | 44.7 | 28.92 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 30.3 | 28.78 |
| CDY48811 | Canola | mitochondrion, nucleus | 50.76 | 27.24 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 37.12 | 26.92 |
| Solyc04g007890.2.1 | Tomato | nucleus | 36.36 | 26.82 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 31.82 | 26.09 |
| PGSC0003DMT400075917 | Potato | nucleus | 35.61 | 25.0 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 25.76 | 25.0 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 29.55 | 24.22 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 25.0 | 24.09 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 31.82 | 24.0 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 31.06 | 23.7 |
| Os08t0428800-00 | Rice | nucleus | 31.06 | 23.03 |
| Zm00001d050368_P001 | Maize | nucleus | 31.06 | 22.4 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 31.06 | 21.69 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 30.3 | 21.16 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 28.79 | 20.65 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 29.55 | 20.63 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 26.52 | 20.59 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 24.24 | 20.38 |
| Zm00001d032239_P001 | Maize | plastid | 28.79 | 19.69 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 31.82 | 19.53 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 31.82 | 19.53 |
| EES15017 | Sorghum | nucleus | 28.79 | 19.19 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 31.06 | 19.07 |
| Os09t0402100-01 | Rice | nucleus | 30.3 | 18.78 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 34.09 | 17.31 |
| CDY67892 | Canola | nucleus | 25.76 | 11.64 |
| Zm00001d020412_P001 | Maize | cytosol | 26.52 | 11.4 |
| CDX95791 | Canola | nucleus | 25.76 | 10.49 |
| EER98875 | Sorghum | nucleus | 25.76 | 10.46 |
| CDX93685 | Canola | nucleus | 31.06 | 10.0 |
| CDY40600 | Canola | nucleus | 31.06 | 9.21 |
| CDY04315 | Canola | nucleus, plastid | 30.3 | 8.85 |
| CDX95794 | Canola | nucleus | 26.52 | 8.27 |
| CDY18486 | Canola | nucleus | 27.27 | 7.59 |
| CDX95560 | Canola | plastid | 28.03 | 7.52 |
| CDX92189 | Canola | nucleus | 24.24 | 7.48 |
| CDY59682 | Canola | nucleus, plastid | 28.03 | 6.16 |
| CDX92188 | Canola | nucleus | 22.73 | 5.99 |
| CDX75957 | Canola | nucleus | 25.0 | 5.36 |
| CDY51930 | Canola | nucleus | 25.0 | 5.34 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | GO:A0A078IFM9 | UniProt:A0A078IFM9 | EnsemblPlants:CDY48812 | ProteinID:CDY48812 |
| ProteinID:CDY48812.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00091741001 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 |
| InterPro:IPR005818 | InterPro:IPR036388 | PFAM:PF00538 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 |
| SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0004EDD171 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
BnaC02g34020DBnaC02g34020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFM9]
Coordinates
chrLK032793:-:83965..84793
Molecular Weight (calculated)
14871.8 Da
IEP (calculated)
6.719
GRAVY (calculated)
-0.658
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGLDIQQT PTMVEHPPQI QELLFSLLPY HQMIMEAIEA SNDAKGCSKT AILKHIETTQ THLPPSHLTL LDYHLNQMKH SGKIVIVKNN YMKPDPKPKP
101: QGDSRHVAVT SPSCFRETTR TTTEEGEDGS RL
101: QGDSRHVAVT SPSCFRETTR TTTEEGEDGS RL
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.