Factsheet for Os09t0402100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931
nucleus: 23303719
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0428800-00	Rice	nucleus	53.05	63.48
GSMUA_Achr6P04240_001	Banana	nucleus	47.89	58.29
HORVU5Hr1G060800.2	Barley	nucleus	49.77	57.61
TraesCS5D01G211400.1	Wheat	nucleus	48.83	55.03
TraesCS5A01G204700.1	Wheat	nucleus	47.42	53.44
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.27	53.28
TraesCS5B01G203600.1	Wheat	nucleus	46.95	52.91
VIT_01s0011g05360.t01	Wine grape	nucleus	44.6	52.2
KRH72989	Soybean	nucleus	41.31	50.0
KRH72991	Soybean	nucleus	40.85	49.43
KRH17357	Soybean	nucleus	40.38	48.86
GSMUA_Achr7P12540_001	Banana	cytosol	31.46	48.2
KRH17355	Soybean	nucleus	39.44	47.73
PGSC0003DMT400040569	Potato	nucleus	35.21	46.88
Solyc11g011160.1.1	Tomato	nucleus	34.74	46.25
KRG97935	Soybean	nucleus	39.44	46.15
Bra017438.1-P	Field mustard	nucleus	34.74	45.12
KRH30939	Soybean	nucleus	38.97	45.11
Solyc04g007890.2.1	Tomato	nucleus	37.56	44.69
VIT_15s0021g02830.t01	Wine grape	nucleus	25.35	43.9
CDY04096	Canola	nucleus	33.8	43.9
PGSC0003DMT400075917	Potato	nucleus	38.03	43.09
CDY17659	Canola	nucleus	40.85	42.44
Bra024870.1-P	Field mustard	nucleus	38.03	42.41
CDY36240	Canola	nucleus	40.85	42.23
GSMUA_Achr5P05890_001	Banana	cytosol	49.77	40.77
AT1G14900.1	Thale cress	nucleus	38.97	40.69
CDY09431	Canola	cytosol	21.6	40.35
PGSC0003DMT400037815	Potato	nucleus	30.05	37.43
VIT_15s0024g01410.t01	Wine grape	plastid	33.33	33.02
EER98875	Sorghum	nucleus	50.23	32.92
Solyc05g051290.2.1	Tomato	nucleus	31.92	32.38
VIT_09s0018g01850.t01	Wine grape	plastid	31.92	31.63
Zm00001d020412_P001	Maize	cytosol	44.6	30.94
CDY09432	Canola	nucleus	27.7	30.73
CDY48812	Canola	cytosol	18.78	30.3
VIT_13s0074g00560.t01	Wine grape	plastid	29.58	29.3
CDY48811	Canola	mitochondrion, nucleus	26.76	23.17

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	EntrezGene:4347003	EMBL:AK068506	InterPro:AT_hook_DNA-bd_motif	ProteinID:BAD36308.1
ProteinID:BAF25038.1	ProteinID:BAT07982.1	GO:GO:0000785	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006334	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	InterPro:HMGA	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	EnsemblPlantsGene:Os09g0402100	EnsemblPlants:Os09t0402100-01	PFAM:PF00538	PRINTS:PR00929
PRINTS:PR00930	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	UniProt:Q69MW7	SMART:SM00384
SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI00000AA86D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015651377.1
SEG:seg	:	:	:	:	:

Description

positive factor 1PF1 protein. (Os09t0402100-01)

Coordinates

chr9:-:14106185..14107309

Molecular Weight (calculated)

21753.9 Da

IEP (calculated)

10.633

GRAVY (calculated)

-0.647

Length

213 amino acids

Sequence
(BLAST)

001: MATEEDASTM AAAEADPKPA ATPSYPEMIL AAIEALDDRN GSNKTAISQH IEGKYEGLLP PAHPSLLTAH LARMKQTGEL AFSKNNYFRG DDPSLPPKRG
101: RGRPPKPKDA AAAAAAPAPA PAAPAASSPR PRGRPPKPKD PLAEAVAKAT SGMPRARGRP PKKAKVEQED PIGAPAAASA PAAAAEAAPP VKRGRGRPPK
201: VRPAAPVGEP AAA

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.