Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 32.46 | 41.57 |
| CDY48812 | Canola | cytosol | 47.37 | 40.91 |
| CDY04096 | Canola | nucleus | 58.77 | 40.85 |
| CDY17659 | Canola | nucleus | 63.16 | 35.12 |
| CDY36240 | Canola | nucleus | 63.16 | 34.95 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 41.23 | 34.31 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 35.96 | 33.33 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 45.61 | 32.3 |
| CDY09432 | Canola | nucleus | 54.39 | 32.29 |
| AT1G14900.1 | Thale cress | nucleus | 57.02 | 31.86 |
| Solyc04g007890.2.1 | Tomato | nucleus | 47.37 | 30.17 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 42.11 | 29.81 |
| CDY48811 | Canola | mitochondrion, nucleus | 63.16 | 29.27 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 43.86 | 28.9 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 45.61 | 28.57 |
| PGSC0003DMT400075917 | Potato | nucleus | 45.61 | 27.66 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 32.46 | 27.21 |
| Os08t0428800-00 | Rice | nucleus | 41.23 | 26.4 |
| Zm00001d050368_P001 | Maize | nucleus | 42.11 | 26.23 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 31.58 | 25.9 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.82 | 24.82 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 37.72 | 24.57 |
| EES15017 | Sorghum | nucleus | 42.11 | 24.24 |
| Zm00001d032239_P001 | Maize | plastid | 40.35 | 23.83 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 35.96 | 22.28 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 36.84 | 22.22 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 36.84 | 22.22 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 32.46 | 21.76 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 35.96 | 21.69 |
| Os09t0402100-01 | Rice | nucleus | 40.35 | 21.6 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 28.07 | 20.38 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 37.72 | 20.0 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 36.84 | 19.53 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 35.96 | 19.07 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 40.35 | 17.69 |
| Zm00001d020412_P001 | Maize | cytosol | 36.84 | 13.68 |
| EER98875 | Sorghum | nucleus | 35.96 | 12.62 |
| CDY67892 | Canola | nucleus | 27.19 | 10.62 |
| CDX95791 | Canola | nucleus | 29.82 | 10.49 |
| CDX93685 | Canola | nucleus | 33.33 | 9.27 |
| CDY18486 | Canola | nucleus | 32.46 | 7.81 |
| CDX95794 | Canola | nucleus | 28.95 | 7.8 |
| CDY40600 | Canola | nucleus | 29.82 | 7.64 |
| CDY04315 | Canola | nucleus, plastid | 29.82 | 7.52 |
| CDX95560 | Canola | plastid | 32.46 | 7.52 |
| CDX92189 | Canola | nucleus | 27.19 | 7.24 |
| CDY59682 | Canola | nucleus, plastid | 31.58 | 5.99 |
| CDX92188 | Canola | nucleus | 23.68 | 5.39 |
| CDX75957 | Canola | nucleus | 27.19 | 5.03 |
| CDY51930 | Canola | nucleus | 27.19 | 5.02 |
Protein Annotations
| MapMan:35.1 | GO:A0A078F7T9 | UniProt:A0A078F7T9 | EnsemblPlants:CDY09431 | ProteinID:CDY09431 | ProteinID:CDY09431.1 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00030928001 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | PFscan:PS51504 |
| PANTHER:PTHR11467 | PANTHER:PTHR11467:SF49 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0004EE0DB9 | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g25790DBnaA02g25790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7T9]
Coordinates
chrLK031995:-:893077..899831
Molecular Weight (calculated)
12784.6 Da
IEP (calculated)
10.145
GRAVY (calculated)
-0.621
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKGVDLQQT PTEEHPPQLQ ELPFSLPPYP RMIMEAIGTS NGCNKTAIVK HIESTQITLP PSHLTLLNYH LNRMKQSGQI VIVKNNYTKP DPNAPPKRGR
101: GLRKPPVTQT QVVL
101: GLRKPPVTQT QVVL
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.