Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17659 | Canola | nucleus | 60.29 | 60.0 |
| CDY36240 | Canola | nucleus | 60.29 | 59.71 |
| CDY09431 | Canola | cytosol | 31.86 | 57.02 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 50.49 | 56.59 |
| Bra017438.1-P | Field mustard | nucleus | 45.1 | 56.1 |
| Bra024870.1-P | Field mustard | nucleus | 52.45 | 56.02 |
| CDY04096 | Canola | nucleus | 44.12 | 54.88 |
| Solyc04g007890.2.1 | Tomato | nucleus | 44.61 | 50.84 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 42.16 | 49.14 |
| PGSC0003DMT400075917 | Potato | nucleus | 44.12 | 47.87 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 28.43 | 47.15 |
| Zm00001d050368_P001 | Maize | nucleus | 42.16 | 46.99 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 36.76 | 46.58 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 36.76 | 46.58 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 20.1 | 46.07 |
| Os08t0428800-00 | Rice | nucleus | 40.2 | 46.07 |
| CDY48812 | Canola | cytosol | 28.92 | 44.7 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.9 | 44.53 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 36.76 | 44.12 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 29.41 | 43.8 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 36.76 | 43.35 |
| Zm00001d032239_P001 | Maize | plastid | 40.2 | 42.49 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 28.43 | 41.73 |
| EES15017 | Sorghum | nucleus | 40.2 | 41.41 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 37.75 | 40.74 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 37.75 | 40.74 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 36.27 | 40.22 |
| CDY09432 | Canola | nucleus | 37.75 | 40.1 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 36.76 | 39.68 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 41.67 | 39.53 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 41.18 | 39.07 |
| Os09t0402100-01 | Rice | nucleus | 40.69 | 38.97 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 38.24 | 36.28 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 24.02 | 36.03 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 27.45 | 35.67 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 43.14 | 33.85 |
| CDY48811 | Canola | mitochondrion, nucleus | 35.78 | 29.67 |
| Zm00001d020412_P001 | Maize | cytosol | 33.82 | 22.48 |
| EER98875 | Sorghum | nucleus | 34.8 | 21.85 |
| AT1G48620.1 | Thale cress | nucleus | 32.35 | 13.78 |
| AT3G18035.1 | Thale cress | nucleus | 31.37 | 13.33 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | EntrezGene:838055 | ProteinID:AAB97739.1 | ProteinID:AAF79232.1 | ProteinID:AEE29240.1 |
| EMBL:AK317240 | EMBL:AK319041 | ArrayExpress:AT1G14900 | EnsemblPlantsGene:AT1G14900 | RefSeq:AT1G14900 | TAIR:AT1G14900 |
| RefSeq:AT1G14900-TAIR-G | EnsemblPlants:AT1G14900.1 | TAIR:AT1G14900.1 | InterPro:AT_hook_DNA-bd_motif | EMBL:AY084355 | EMBL:BT004806 |
| ProteinID:CAA71797.1 | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA | Symbol:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 |
| InterPro:IPR005818 | InterPro:IPR036388 | RefSeq:NP_172943.1 | PFAM:PF00538 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00929 | PRINTS:PR00930 |
| PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | UniProt:Q43386 | SMART:SM00384 | SMART:SM00526 |
| SUPFAM:SSF46785 | UniParc:UPI000000C49B | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | EMBL:X99116 | SEG:seg |
Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
Coordinates
chr1:-:5138116..5139467
Molecular Weight (calculated)
22012.3 Da
IEP (calculated)
10.635
GRAVY (calculated)
-0.897
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.