Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075917 | Potato | nucleus | 87.15 | 82.98 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 58.66 | 57.69 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 36.87 | 53.66 |
| Bra017438.1-P | Field mustard | nucleus | 46.93 | 51.22 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 44.69 | 49.69 |
| Solyc11g011160.1.1 | Tomato | nucleus | 43.02 | 48.12 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 36.31 | 47.45 |
| CDY09431 | Canola | cytosol | 30.17 | 47.37 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 42.46 | 47.2 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 23.46 | 47.19 |
| CDY04096 | Canola | nucleus | 43.02 | 46.95 |
| Os08t0428800-00 | Rice | nucleus | 46.37 | 46.63 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 44.13 | 45.66 |
| Bra024870.1-P | Field mustard | nucleus | 48.6 | 45.55 |
| CDY17659 | Canola | nucleus | 51.4 | 44.88 |
| AT1G14900.1 | Thale cress | nucleus | 50.84 | 44.61 |
| Zm00001d050368_P001 | Maize | nucleus | 45.25 | 44.26 |
| CDY36240 | Canola | nucleus | 50.84 | 44.17 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 41.34 | 42.29 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 39.66 | 41.76 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 31.84 | 41.61 |
| Zm00001d032239_P001 | Maize | plastid | 44.69 | 41.45 |
| EES15017 | Sorghum | nucleus | 45.81 | 41.41 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 40.78 | 39.67 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 29.61 | 38.13 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 40.22 | 38.1 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 39.66 | 37.57 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 39.66 | 37.57 |
| Os09t0402100-01 | Rice | nucleus | 44.69 | 37.56 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 28.49 | 37.5 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 44.69 | 37.21 |
| CDY48812 | Canola | cytosol | 26.82 | 36.36 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 43.58 | 36.28 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 43.02 | 35.81 |
| Solyc05g051290.2.1 | Tomato | nucleus | 41.34 | 35.24 |
| CDY09432 | Canola | nucleus | 34.64 | 32.29 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 45.81 | 31.54 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 26.82 | 30.57 |
| CDY48811 | Canola | mitochondrion, nucleus | 36.87 | 26.83 |
| EER98875 | Sorghum | nucleus | 40.22 | 22.15 |
| Zm00001d020412_P001 | Maize | cytosol | 37.43 | 21.82 |
| Solyc03g119130.2.1 | Tomato | nucleus | 32.4 | 11.2 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 |
| InterPro:IPR005818 | InterPro:IPR036388 | UniProt:K4BNU6 | PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 |
| PRINTS:PR00930 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 |
| SUPFAM:SSF46785 | EnsemblPlantsGene:Solyc04g007890.2 | EnsemblPlants:Solyc04g007890.2.1 | UniParc:UPI0002766BB8 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:1565887..1566751
Molecular Weight (calculated)
19455.6 Da
IEP (calculated)
10.938
GRAVY (calculated)
-0.952
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEEHNLTL PSYPDMIMEA IDALNEEEGS NKSAIWKQIE ATHGTLPPAH GTLLAHHLNQ MKQAGQLVML KNNYMKPNPN APPRRGRGRP PKPKSSVPVP
101: DGYPRPRGRP PKERDPYAPI TVPMKKTSEG SSGGSGKKRG RPRKYPMTED TPVVKPIGAP RGRGRPPKVK TPVAATVGA
101: DGYPRPRGRP PKERDPYAPI TVPMKKTSEG SSGGSGKKRG RPRKYPMTED TPVVKPIGAP RGRGRPPKVK TPVAATVGA
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.