Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
nucleus: 23303719 nucleus: 24133045 nucleus: 26035336 extracellular: 28232208 |
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
23303719
doi
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 37.08 | 74.16 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 66.85 | 73.91 |
| Zm00001d032239_P001 | Maize | plastid | 79.78 | 73.58 |
| Zm00001d050368_P001 | Maize | nucleus | 74.72 | 72.68 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 65.73 | 72.67 |
| EES15017 | Sorghum | nucleus | 78.65 | 70.71 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 67.42 | 69.36 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 46.63 | 60.58 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 59.55 | 60.57 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 42.7 | 55.47 |
| Os09t0402100-01 | Rice | nucleus | 63.48 | 53.05 |
| KRH72991 | Soybean | nucleus | 52.25 | 52.84 |
| KRH17357 | Soybean | nucleus | 52.25 | 52.84 |
| KRH72989 | Soybean | nucleus | 51.69 | 52.27 |
| KRH17355 | Soybean | nucleus | 50.56 | 51.14 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 51.69 | 50.55 |
| KRG97935 | Soybean | nucleus | 50.56 | 49.45 |
| Solyc11g011160.1.1 | Tomato | nucleus | 44.38 | 49.38 |
| KRH30939 | Soybean | nucleus | 50.56 | 48.91 |
| PGSC0003DMT400040569 | Potato | nucleus | 43.82 | 48.75 |
| Solyc04g007890.2.1 | Tomato | nucleus | 46.63 | 46.37 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 32.02 | 46.34 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 35.39 | 45.32 |
| Bra017438.1-P | Field mustard | nucleus | 41.57 | 45.12 |
| CDY04096 | Canola | nucleus | 41.57 | 45.12 |
| PGSC0003DMT400075917 | Potato | nucleus | 46.07 | 43.62 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 61.8 | 42.31 |
| PGSC0003DMT400037815 | Potato | nucleus | 40.45 | 42.11 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 37.08 | 42.04 |
| CDY09431 | Canola | cytosol | 26.4 | 41.23 |
| CDY17659 | Canola | nucleus | 46.63 | 40.49 |
| Bra024870.1-P | Field mustard | nucleus | 43.26 | 40.31 |
| AT1G14900.1 | Thale cress | nucleus | 46.07 | 40.2 |
| CDY36240 | Canola | nucleus | 45.51 | 39.32 |
| Solyc05g051290.2.1 | Tomato | nucleus | 43.82 | 37.14 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 40.45 | 33.49 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 39.33 | 32.56 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 38.76 | 32.09 |
| CDY48812 | Canola | cytosol | 23.03 | 31.06 |
| CDY09432 | Canola | nucleus | 32.58 | 30.21 |
| CDY48811 | Canola | mitochondrion, nucleus | 31.46 | 22.76 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | EntrezGene:4345627 | InterPro:AT_hook_DNA-bd_motif | ProteinID:BAC24935.1 | ProteinID:BAD01198.1 |
| ProteinID:BAF23764.2 | ProteinID:BAT05532.1 | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 |
| EnsemblPlantsGene:Os08g0428800 | EnsemblPlants:Os08t0428800-00 | PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 | PRINTS:PR00930 |
| PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF85 | UniProt:Q8H3M0 | SMART:SM00384 | SMART:SM00526 |
| SUPFAM:SSF46785 | UniParc:UPI00000AD7DB | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | RefSeq:XP_015648585.1 | SEG:seg |
Description
Similar to High mobility group I/Y-2. (Os08t0428800-00)
Coordinates
chr8:-:20657025..20658055
Molecular Weight (calculated)
18672.5 Da
IEP (calculated)
11.165
GRAVY (calculated)
-0.894
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAADEASKP PPLPPYPEMI LAAIEGLNEK SGSNKSAISK FIEGKYGDLP PAHASLLTAH LARMKESGEL IFLKNNYFRA DAPDAPPKRG RGRPPKPRDP
101: NAPPPPPKPS SPRPRGRPPK SKDPISDAIP KSRGRPPKKA KTAPAPPPAA GDGSAPVKRG RGRPPKVRPA VPSEAAAA
101: NAPPPPPKPS SPRPRGRPPK SKDPISDAIP KSRGRPPKKA KTAPAPPPAA GDGSAPVKRG RGRPPKVRPA VPSEAAAA
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.