CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97935	Soybean	nucleus	77.72	78.57
KRH72989	Soybean	nucleus	63.04	65.91
KRH17355	Soybean	nucleus	61.41	64.2
KRH72991	Soybean	nucleus	60.87	63.64
KRH17357	Soybean	nucleus	60.33	63.07
OQU80556	Sorghum	cytoskeleton, cytosol, nucleus	27.72	57.3
Zm00001d050368_P001	Maize	nucleus	52.17	52.46
TraesCS5D01G400300.1	Wheat	nucleus	45.11	51.55
HORVU5Hr1G095410.1	Barley	nucleus	38.04	51.09
Solyc11g011160.1.1	Tomato	nucleus	44.02	50.62
PGSC0003DMT400040569	Potato	nucleus	44.02	50.62
Os08t0428800-00	Rice	nucleus	48.91	50.56
GSMUA_Achr6P04240_001	Banana	nucleus	46.74	49.14
TraesCS5A01G390500.1	Wheat	nucleus	46.2	49.13
TraesCS5B01G395400.1	Wheat	nucleus	42.39	48.45
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.78	46.72
GSMUA_Achr7P12540_001	Banana	cytosol	34.78	46.04
Zm00001d032239_P001	Maize	plastid	47.83	45.6
HORVU5Hr1G060800.2	Barley	nucleus	45.11	45.11
GSMUA_Achr7P10310_001	Banana	nucleus	41.3	44.71
EES15017	Sorghum	nucleus	47.83	44.44
PGSC0003DMT400037815	Potato	nucleus	40.76	43.86
TraesCS5B01G203600.1	Wheat	nucleus	44.57	43.39
TraesCS5D01G211400.1	Wheat	nucleus	44.02	42.86
TraesCS5A01G204700.1	Wheat	nucleus	42.93	41.8
GSMUA_Achr9P28490_001	Banana	nucleus	28.8	38.97
Os09t0402100-01	Rice	nucleus	45.11	38.97
Solyc05g051290.2.1	Tomato	nucleus	41.3	36.19
GSMUA_Achr5P05890_001	Banana	cytosol	47.83	33.85
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	26.09	30.57
KRH72147	Soybean	cytosol	25.0	29.87
KRG88430	Soybean	nucleus	34.24	26.25
KRG94697	Soybean	cytosol	23.91	24.44
Zm00001d020412_P001	Maize	cytosol	38.59	23.13
EER98875	Sorghum	nucleus	40.22	22.77
KRH60528	Soybean	nucleus	37.5	18.02
KRH41804	Soybean	nucleus	35.33	15.74
KRH39095	Soybean	nucleus	36.41	13.48

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100804682	MapMan:35.1	EMBL:ACUP02007106	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_11G216300
GO:GO:0000785	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006334
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
InterPro:HMGA	InterPro:Histone_H1/H5_H15	UniProt:I1LMC4	InterPro:IPR005818	InterPro:IPR036388	EnsemblPlants:KRH30939
ProteinID:KRH30939	ProteinID:KRH30939.1	PFAM:PF00538	PFAM:PF02178	PRINTS:PR00929	PRINTS:PR00930
PFscan:PS51504	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI000233CFCB	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:31052357..31053787

Molecular Weight (calculated)

20072.4 Da

IEP (calculated)

11.549

GRAVY (calculated)

-0.864

Length

184 amino acids

Sequence
(BLAST)

001: MATGQVINKP PSLPPYPEMI REAIEALNEE NGSNKSSISK YIESTYGGLP QAHKVLLNVH LAKMRESGVL VFWKNNYTKR DPNAPPRRGR GRPPKPKEPL
101: PPGTVLSPPR PRGRPSKDPN DLQKPLKASV VGSGRPRGRP RKMAWPTGGL GEVSQASKAK PVTSNGRPRG RPPKVKAVFT EISV

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.