CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17355	Soybean	nucleus	96.02	96.02
KRH72991	Soybean	nucleus	93.18	93.18
KRH72989	Soybean	nucleus	90.91	90.91
KRH30939	Soybean	nucleus	63.07	60.33
KRG97935	Soybean	nucleus	61.93	59.89
OQU80556	Sorghum	cytoskeleton, cytosol, nucleus	27.27	53.93
Solyc11g011160.1.1	Tomato	nucleus	48.86	53.75
PGSC0003DMT400040569	Potato	nucleus	48.3	53.12
TraesCS5D01G400300.1	Wheat	nucleus	48.3	52.8
Os08t0428800-00	Rice	nucleus	52.84	52.25
Zm00001d050368_P001	Maize	nucleus	53.98	51.91
HORVU5Hr1G095410.1	Barley	nucleus	40.34	51.82
TraesCS5B01G395400.1	Wheat	nucleus	47.16	51.55
TraesCS5A01G390500.1	Wheat	nucleus	48.86	49.71
GSMUA_Achr6P04240_001	Banana	nucleus	48.3	48.57
PGSC0003DMT400037815	Potato	nucleus	47.16	48.54
GSMUA_Achr7P10310_001	Banana	nucleus	45.45	47.06
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.36	46.72
HORVU5Hr1G060800.2	Barley	nucleus	48.3	46.2
Zm00001d032239_P001	Maize	plastid	50.57	46.11
EES15017	Sorghum	nucleus	51.14	45.45
TraesCS5D01G211400.1	Wheat	nucleus	48.3	44.97
TraesCS5B01G203600.1	Wheat	nucleus	47.16	43.92
GSMUA_Achr7P12540_001	Banana	cytosol	34.66	43.88
TraesCS5A01G204700.1	Wheat	nucleus	46.02	42.86
Solyc05g051290.2.1	Tomato	nucleus	48.86	40.95
Os09t0402100-01	Rice	nucleus	48.86	40.38
GSMUA_Achr9P28490_001	Banana	nucleus	30.68	39.71
GSMUA_Achr5P05890_001	Banana	cytosol	52.27	35.38
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	27.84	31.21
KRH72147	Soybean	cytosol	23.86	27.27
KRG88430	Soybean	nucleus	36.36	26.67
EER98875	Sorghum	nucleus	44.89	24.31
Zm00001d020412_P001	Maize	cytosol	42.05	24.1
KRG94697	Soybean	cytosol	23.86	23.33
KRH60528	Soybean	nucleus	39.77	18.28
KRH41804	Soybean	nucleus	38.07	16.22
KRH39095	Soybean	nucleus	40.91	14.49

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100802642	MapMan:35.1	EMBL:ACUP02009083	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_14G215200
GO:GO:0000785	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006334
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
InterPro:HMGA	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	UniProt:I1MBW3	InterPro:IPR005818	InterPro:IPR036388
EnsemblPlants:KRH17357	ProteinID:KRH17357	ProteinID:KRH17357.1	PFAM:PF00538	PRINTS:PR00929	PRINTS:PR00930
PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF49	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785
UniParc:UPI0001E249DA	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:-:47987349..47988254

Molecular Weight (calculated)

18899.8 Da

IEP (calculated)

10.951

GRAVY (calculated)

-0.994

Length

176 amino acids

Sequence
(BLAST)

001: MATEEVNKPQ SLPPYPEMIV KALEALNEAD GSNKSAISKY IETTYGELPD ETVLGSHLNK MKESGELAFK QNNYMKADPN APPKRGRGRP PKPKVPLPPG
101: TVVSPPRPRG RPPKDPNAPP KSPKAKATPA TGRPRGRPKK VARSPAVPSP TAVSTGRPRG RPPKVKPQLT EVSVES

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.