Factsheet for Zm00001d050368_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 19781672

extracellular: 20408568
mitochondrion: 27297264

gfp PMID: 19781672 doi

J Zhao, LK Paul, G Grafi

Department of Plant Sciences, The Weizmann Institute of Science, Rehovot 76100, Israel.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032239_P001	Maize	plastid	83.06	78.76
OQU80556	Sorghum	cytoskeleton, cytosol, nucleus	37.7	77.53
Os08t0428800-00	Rice	nucleus	72.68	74.72
EES15017	Sorghum	nucleus	79.78	73.74
TraesCS5D01G400300.1	Wheat	nucleus	59.02	67.08
TraesCS5B01G395400.1	Wheat	nucleus	58.47	66.46
TraesCS5A01G390500.1	Wheat	nucleus	59.56	63.01
GSMUA_Achr6P04240_001	Banana	nucleus	59.02	61.71
HORVU5Hr1G095410.1	Barley	nucleus	45.9	61.31
VIT_01s0011g05360.t01	Wine grape	nucleus	56.28	56.59
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.44	54.01
KRH72989	Soybean	nucleus	51.91	53.98
KRH72991	Soybean	nucleus	51.91	53.98
KRH17357	Soybean	nucleus	51.91	53.98
KRH17355	Soybean	nucleus	50.82	52.84
KRG97935	Soybean	nucleus	51.91	52.2
KRH30939	Soybean	nucleus	52.46	52.17
VIT_15s0021g02830.t01	Wine grape	nucleus	32.79	48.78
PGSC0003DMT400040569	Potato	nucleus	42.62	48.75
Solyc11g011160.1.1	Tomato	nucleus	41.53	47.5
GSMUA_Achr7P12540_001	Banana	cytosol	36.07	47.48
Bra017438.1-P	Field mustard	nucleus	42.08	46.95
GSMUA_Achr5P05890_001	Banana	cytosol	65.03	45.77
Solyc04g007890.2.1	Tomato	nucleus	44.26	45.25
CDY04096	Canola	nucleus	39.89	44.51
PGSC0003DMT400075917	Potato	nucleus	44.81	43.62
AT1G14900.1	Thale cress	nucleus	46.99	42.16
CDY09431	Canola	cytosol	26.23	42.11
Bra024870.1-P	Field mustard	nucleus	43.72	41.88
CDY17659	Canola	nucleus	45.36	40.49
PGSC0003DMT400037815	Potato	nucleus	37.7	40.35
CDY36240	Canola	nucleus	44.81	39.81
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	33.88	39.49
VIT_15s0024g01410.t01	Wine grape	plastid	42.08	35.81
VIT_09s0018g01850.t01	Wine grape	plastid	41.53	35.35
VIT_13s0074g00560.t01	Wine grape	plastid	39.34	33.49
Solyc05g051290.2.1	Tomato	nucleus	38.25	33.33
CDY48812	Canola	cytosol	22.4	31.06
CDY09432	Canola	nucleus	31.69	30.21
Zm00001d020412_P001	Maize	cytosol	47.54	28.34
CDY48811	Canola	mitochondrion, nucleus	31.15	23.17

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	ProteinID:AQK52418.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0000785	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006334	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	InterPro:HMGA	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	UniProt:K7UV01	PFAM:PF00538	PFAM:PF02178	PRINTS:PR00929
PRINTS:PR00930	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF85	SMART:SM00384	SMART:SM00526
SUPFAM:SSF46785	UniParc:UPI0002211FAB	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d050368	EnsemblPlants:Zm00001d050368_P001
EnsemblPlants:Zm00001d050368_T001	SEG:seg	:	:	:	:

Description

HMG-Y-related protein A

Coordinates

chr4:-:84247503..84248847

Molecular Weight (calculated)

19084.8 Da

IEP (calculated)

10.920

GRAVY (calculated)

-0.804

Length

183 amino acids

Sequence
(BLAST)

001: MATEEVAKPS PIPPYPEMIL AAIEDLGDKS GSNKSAISRY IEGKYDGDLP PAHASLLAAH LARMKESGEL VFVKNNYFRA DAPDAPPKRG RGRPPKARDP
101: GAPVSPPSGR GRGRPPKPKD PLDAAVKQAT AGMPRARGRP PKKAKTEGGA SPAPAGDGST PVKRGRGRPP KVRPVVPSET AAA

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.