Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g007890.2.1 | Tomato | nucleus | 82.98 | 87.15 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 54.26 | 56.04 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 34.57 | 52.85 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 22.87 | 48.31 |
| Bra017438.1-P | Field mustard | nucleus | 42.02 | 48.17 |
| PGSC0003DMT400040569 | Potato | nucleus | 40.43 | 47.5 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 40.43 | 47.2 |
| Os08t0428800-00 | Rice | nucleus | 43.62 | 46.07 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 33.51 | 45.99 |
| CDY04096 | Canola | nucleus | 39.89 | 45.73 |
| CDY09431 | Canola | cytosol | 27.66 | 45.61 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 38.83 | 45.34 |
| Zm00001d050368_P001 | Maize | nucleus | 43.62 | 44.81 |
| PGSC0003DMT400037815 | Potato | nucleus | 40.43 | 44.44 |
| AT1G14900.1 | Thale cress | nucleus | 47.87 | 44.12 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 39.89 | 43.35 |
| Bra024870.1-P | Field mustard | nucleus | 43.62 | 42.93 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 39.89 | 42.86 |
| CDY17659 | Canola | nucleus | 46.28 | 42.44 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.85 | 42.34 |
| CDY36240 | Canola | nucleus | 46.28 | 42.23 |
| Zm00001d032239_P001 | Maize | plastid | 42.55 | 41.45 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 37.23 | 41.18 |
| EES15017 | Sorghum | nucleus | 43.09 | 40.91 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 39.36 | 40.22 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 38.83 | 38.62 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 38.3 | 38.1 |
| Os09t0402100-01 | Rice | nucleus | 43.09 | 38.03 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 37.77 | 37.57 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 27.13 | 37.5 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 27.66 | 37.41 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 40.96 | 35.81 |
| CDY48812 | Canola | cytosol | 25.0 | 35.61 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 39.89 | 34.88 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 39.36 | 34.42 |
| CDY09432 | Canola | nucleus | 32.98 | 32.29 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 43.62 | 31.54 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 22.87 | 27.39 |
| CDY48811 | Canola | mitochondrion, nucleus | 34.57 | 26.42 |
| EER98875 | Sorghum | nucleus | 40.43 | 23.38 |
| Zm00001d020412_P001 | Maize | cytosol | 36.7 | 22.48 |
| PGSC0003DMT400014700 | Potato | extracellular, nucleus | 34.04 | 12.14 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:102582893 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | UniProt:M1CVX9 | PFAM:PF00538 |
| EnsemblPlantsGene:PGSC0003DMG400029519 | PGSC:PGSC0003DMG400029519 | EnsemblPlants:PGSC0003DMT400075917 | PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 |
| PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI000295EA23 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | RefSeq:XP_006355073.1 | SEG:seg | : | : | : |
Description
High mobility group family [Source:PGSC_GENE;Acc:PGSC0003DMG400029519]
Coordinates
chr4:+:2534520..2535413
Molecular Weight (calculated)
20199.5 Da
IEP (calculated)
10.991
GRAVY (calculated)
-0.813
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEEASSTL PSYPDMIMEA IDALNEEEGS NKSAIWRQIE GTHGTLPPAH GTLLAHHLNQ MKQAGQLVML KNNYMKPNPN APPRRGRGRP PKPKASVPVP
101: DGYPRPRGRP PKERAPYAPI TVPMKKTATE SSSGGSGKKR GRPRKYPMTE DNPVAVGVVE VPVKPIGTPR GRGRPPKVKT PVAATVGA
101: DGYPRPRGRP PKERAPYAPI TVPMKKTATE SSSGGSGKKR GRPRKYPMTE DNPVAVGVVE VPVKPIGTPR GRGRPPKVKT PVAATVGA
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.