Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17659 | Canola | nucleus | 95.15 | 95.61 |
| Bra024870.1-P | Field mustard | nucleus | 77.67 | 83.77 |
| CDY09431 | Canola | cytosol | 34.95 | 63.16 |
| CDY04096 | Canola | nucleus | 49.51 | 62.2 |
| AT1G14900.1 | Thale cress | nucleus | 59.71 | 60.29 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 48.06 | 54.4 |
| CDY48812 | Canola | cytosol | 33.5 | 52.27 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 39.81 | 50.93 |
| Solyc04g007890.2.1 | Tomato | nucleus | 44.17 | 50.84 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 41.26 | 48.57 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 37.86 | 48.45 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 39.81 | 47.4 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 28.16 | 47.15 |
| CDY09432 | Canola | nucleus | 43.69 | 46.88 |
| PGSC0003DMT400075917 | Potato | nucleus | 42.23 | 46.28 |
| Os08t0428800-00 | Rice | nucleus | 39.32 | 45.51 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 19.42 | 44.94 |
| Zm00001d050368_P001 | Maize | nucleus | 39.81 | 44.81 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.13 | 43.8 |
| Zm00001d032239_P001 | Maize | plastid | 40.78 | 43.52 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 38.84 | 43.48 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 39.32 | 42.86 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 28.16 | 42.34 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 37.86 | 41.27 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 37.86 | 41.27 |
| EES15017 | Sorghum | nucleus | 39.32 | 40.91 |
| Os09t0402100-01 | Rice | nucleus | 42.23 | 40.85 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 27.18 | 40.29 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 40.78 | 39.07 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 25.73 | 38.97 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 31.55 | 38.24 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 39.81 | 38.14 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 37.38 | 35.81 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 41.75 | 33.08 |
| CDY48811 | Canola | mitochondrion, nucleus | 38.35 | 32.11 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 23.79 | 31.21 |
| Zm00001d020412_P001 | Maize | cytosol | 36.89 | 24.76 |
| EER98875 | Sorghum | nucleus | 38.84 | 24.62 |
| CDY67892 | Canola | nucleus | 25.24 | 17.81 |
| CDX93685 | Canola | nucleus | 33.98 | 17.07 |
| CDX95791 | Canola | nucleus | 26.7 | 16.98 |
| CDY40600 | Canola | nucleus | 33.01 | 15.28 |
| CDY04315 | Canola | nucleus, plastid | 31.55 | 14.38 |
| CDY18486 | Canola | nucleus | 31.07 | 13.5 |
| CDX95794 | Canola | nucleus | 27.67 | 13.48 |
| CDX95560 | Canola | plastid | 32.04 | 13.41 |
| CDX92189 | Canola | nucleus | 23.79 | 11.45 |
| CDX92188 | Canola | nucleus | 27.18 | 11.18 |
| CDY59682 | Canola | nucleus, plastid | 31.07 | 10.65 |
| CDY51930 | Canola | nucleus | 27.67 | 9.22 |
| CDX75957 | Canola | nucleus | 27.18 | 9.09 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | GO:A0A078HCW0 | UniProt:A0A078HCW0 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY36240 |
| ProteinID:CDY36240 | ProteinID:CDY36240.1 | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00060191001 | InterPro:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 |
| InterPro:IPR005818 | InterPro:IPR036388 | PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 | PRINTS:PR00930 |
| PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 |
| UniParc:UPI0004EE4A7B | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
BnaC07g20940DBnaC07g20940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCW0]
Coordinates
chrLK032371:+:108875..109945
Molecular Weight (calculated)
22038.3 Da
IEP (calculated)
10.305
GRAVY (calculated)
-0.986
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETEFEPQ QSPMAEEQPS PFSLPPYPQM IMEAIEASND ANGCNKTAIA KHIESTQASL PPSHMTLLSY HLNQMKQSGQ IAMVKNNYMK PDPHAPPKRG
101: RGRPPKAKPQ GDSSHVAVPA PAPPVSSPRP RGRPPKAKEP SSEVETKVAE PSGSGRPRGR PPKKQKTESE AVKADVEPAE APAGTGERRG RGRPPKAKPA
201: MVPVGC
101: RGRPPKAKPQ GDSSHVAVPA PAPPVSSPRP RGRPPKAKEP SSEVETKVAE PSGSGRPRGR PPKKQKTESE AVKADVEPAE APAGTGERRG RGRPPKAKPA
201: MVPVGC
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.