CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18486	Canola	nucleus	73.78	76.58
CDX93685	Canola	nucleus	34.96	41.95
CDY40600	Canola	nucleus	37.2	41.12
CDY04315	Canola	nucleus, plastid	37.4	40.71
VIT_17s0000g02550.t01	Wine grape	nucleus	23.58	32.68
CDY09431	Canola	cytosol	7.52	32.46
KRH60528	Soybean	nucleus	25.0	32.11
KRG88430	Soybean	nucleus	15.65	32.08
CDY36240	Canola	nucleus	13.41	32.04
CDY17659	Canola	nucleus	13.21	31.71
KRH72147	Soybean	cytosol	9.76	31.17
CDY04096	Canola	nucleus	9.96	29.88
CDX75957	Canola	nucleus	36.18	28.9
KRH41804	Soybean	nucleus	24.19	28.81
CDY59682	Canola	nucleus, plastid	34.96	28.62
CDX92189	Canola	nucleus	24.8	28.5
KRG94697	Soybean	cytosol	10.37	28.33
CDY48812	Canola	cytosol	7.52	28.03
CDX95794	Canola	nucleus	23.78	27.66
CDX92188	Canola	nucleus	26.42	25.95
CDX95791	Canola	nucleus	17.07	25.93
CDY67892	Canola	nucleus	15.24	25.68
CDY09432	Canola	nucleus	9.55	24.48
CDY51930	Canola	nucleus	29.07	23.14
KRH39095	Soybean	nucleus	23.37	23.14
PGSC0003DMT400014700	Potato	extracellular, nucleus	24.59	22.96
Solyc03g119130.2.1	Tomato	nucleus	23.98	22.78
CDY48811	Canola	mitochondrion, nucleus	8.74	17.48

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078E1I9	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDX95560	ProteinID:CDX95560
ProteinID:CDX95560.1	GO:GO:0000785	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006334	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00101409001	InterPro:HMGA	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818
InterPro:IPR036388	PFAM:PF00538	PRINTS:PR00929	PRINTS:PR00930	PFscan:PS51504	PANTHER:PTHR11467
PANTHER:PTHR11467:SF29	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EE17AC	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC01g34520D

Coordinates

chrLK031889:+:1258418..1260938

Molecular Weight (calculated)

52075.4 Da

IEP (calculated)

10.311

GRAVY (calculated)

-0.713

Length

492 amino acids

Sequence
(BLAST)

001: MDPSLSSDPH RPPQYSPFPQ YPTSNSPFVS APNLPFYGAQ PVNQTPFNTH VSPPQPQPQT QTQTPPSQTA PPYSELIVEA IAHLNEPEGS SKMAISRYIE
101: RSNPVLPTDH QALLAHHLKT LKNCGVLSMV KKSYKLAASS SAPESVAVAA AAAAAGLAAP RSESPLGNPG HLDPASGPVS GSASQPQKRG RGRPPKPKPE
201: ASPQQQQQVV IAQPNAVQLN GQPSWEQPQF PVASPTQTVT ESAKRGPGRP RKDGSAPIPR PAGLSVIMKR RGRPPGRRAA GRQRKPLSVS STASVFPYVA
301: NGARRRGRPR RVDSGGVPVA APAGGEAVAA APGIKRGRGR PPKVGGVKNR LITKPKRGRG RPVGRPRKNP WPVTVATGAL ESAYGELKAK LDLCNEKAKE
401: ILNVLNAGII NNDNQAAVEA AQKLEGLITM MAVEPQAVEE AQPEEAAPQT EAEEPQGEGE GHGQEREGEE EQAPTDQTQV QTDAEAMQEA LF

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.