Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 22.25 | 43.41 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 14.37 | 41.46 |
| KRG88430 | Soybean | nucleus | 25.63 | 37.92 |
| KRH72147 | Soybean | cytosol | 15.21 | 35.06 |
| KRH60528 | Soybean | nucleus | 37.75 | 34.99 |
| KRH41804 | Soybean | nucleus | 37.46 | 32.2 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 18.87 | 31.16 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 18.59 | 30.7 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 18.31 | 30.23 |
| Bra018744.1-P | Field mustard | nucleus | 32.96 | 28.89 |
| CDX93685 | Canola | nucleus | 32.68 | 28.29 |
| KRG94697 | Soybean | cytosol | 14.08 | 27.78 |
| CDY40600 | Canola | nucleus | 33.24 | 26.52 |
| KRH39095 | Soybean | nucleus | 36.62 | 26.16 |
| CDY04315 | Canola | nucleus, plastid | 33.24 | 26.11 |
| AT1G48620.1 | Thale cress | nucleus | 34.08 | 25.26 |
| Bra021288.1-P | Field mustard | nucleus | 30.99 | 24.18 |
| CDY18486 | Canola | nucleus | 31.55 | 23.63 |
| CDX95560 | Canola | plastid | 32.68 | 23.58 |
| AT3G18035.1 | Thale cress | nucleus | 30.42 | 22.5 |
| Solyc03g119130.2.1 | Tomato | nucleus | 32.68 | 22.39 |
| PGSC0003DMT400014700 | Potato | extracellular, nucleus | 32.39 | 21.82 |
| CDY67892 | Canola | nucleus | 17.18 | 20.89 |
| CDX95794 | Canola | nucleus | 23.1 | 19.39 |
| CDX95791 | Canola | nucleus | 17.46 | 19.14 |
| CDY59682 | Canola | nucleus, plastid | 30.99 | 18.3 |
| Bra032258.1-P | Field mustard | nucleus, plastid | 30.7 | 18.08 |
| CDX92189 | Canola | nucleus | 20.85 | 17.29 |
| Bra022274.1-P | Field mustard | nucleus | 21.41 | 17.0 |
| CDX92188 | Canola | nucleus | 23.66 | 16.77 |
| Bra022273.1-P | Field mustard | nucleus | 23.66 | 16.67 |
| CDX75957 | Canola | nucleus | 27.89 | 16.07 |
| CDY51930 | Canola | nucleus | 25.07 | 14.4 |
| Bra001696.1-P | Field mustard | nucleus | 25.07 | 14.4 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100853898 | wikigene:100853898 | MapMan:35.2 | UniProt:A5BLU3 | EMBL:AM463934 |
| InterPro:AT_hook_DNA-bd_motif | ProteinID:CAN74749 | ProteinID:CAN74749.1 | ProteinID:CBI15554 | ProteinID:CBI15554.3 | EMBL:FN594950 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | EntrezGene:LOC100853898 |
| wikigene:LOC100853898 | PFAM:PF00538 | PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF33 |
| SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | TIGR:TC70327 | UniParc:UPI00015213BD | ArrayExpress:VIT_17s0000g02550 |
| EnsemblPlantsGene:VIT_17s0000g02550 | EnsemblPlants:VIT_17s0000g02550.t01 | unigene:Vvi.6428 | unigene:Vvi.9530 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| RefSeq:XP_003634203 | RefSeq:XP_003634203.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr17:-:2349564..2352090
Molecular Weight (calculated)
37623.9 Da
IEP (calculated)
11.570
GRAVY (calculated)
-0.627
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPAPPPPLP PPPPPQPPAA SEAHVAHAAN PTPSHGPPHN HPPYAEMITT AIGALNERTG SSKKAIAKYI ERTFGDLPPS HPALLTHHLK RLRSSGQVVM
101: VKHSYMLPRS GDDAHALPLH PGPVSGPKRG RGRPPKPKIP VQPTSESVLV AVGLVDGPVV PKRGPGRPPK SGGVRGPRPK SLDGPKRRPG RPPKAQLGGV
201: IPGGVPRERP RTAGVTKVKV SGRPRGRPPK ILTVGAGVGG GLSVKRRGRP PKADGPKRPK KLTGRPVGRP RKKLATGEIL PAASEQPVAE WMNYEDLKQK
301: LEHIQGKIKL SVGVLRTQFS ENNVSAMSAL QELEDLATMD ISAPLNIEGQ LFFGN
101: VKHSYMLPRS GDDAHALPLH PGPVSGPKRG RGRPPKPKIP VQPTSESVLV AVGLVDGPVV PKRGPGRPPK SGGVRGPRPK SLDGPKRRPG RPPKAQLGGV
201: IPGGVPRERP RTAGVTKVKV SGRPRGRPPK ILTVGAGVGG GLSVKRRGRP PKADGPKRPK KLTGRPVGRP RKKLATGEIL PAASEQPVAE WMNYEDLKQK
301: LEHIQGKIKL SVGVLRTQFS ENNVSAMSAL QELEDLATMD ISAPLNIEGQ LFFGN
001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
Arabidopsis Description
HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.