Factsheet for Bra032258.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59682	Canola	nucleus, plastid	97.18	97.5
Bra018744.1-P	Field mustard	nucleus	35.49	52.84
AT1G48620.1	Thale cress	nucleus	35.49	44.68
Bra021288.1-P	Field mustard	nucleus	27.69	36.7
KRH72147	Soybean	cytosol	8.62	33.77
Bra017438.1-P	Field mustard	nucleus	8.62	31.71
KRG88430	Soybean	nucleus	12.6	31.67
KRG94697	Soybean	cytosol	9.45	31.67
KRH60528	Soybean	nucleus	20.07	31.59
Bra024870.1-P	Field mustard	nucleus	9.78	30.89
VIT_17s0000g02550.t01	Wine grape	nucleus	18.08	30.7
KRH41804	Soybean	nucleus	19.9	29.06
KRH39095	Soybean	nucleus	20.56	24.95
Bra022274.1-P	Field mustard	nucleus	15.92	21.48
Bra022273.1-P	Field mustard	nucleus	17.41	20.83
PGSC0003DMT400014700	Potato	extracellular, nucleus	18.08	20.68
Solyc03g119130.2.1	Tomato	nucleus	16.58	19.3
Bra001696.1-P	Field mustard	nucleus	19.73	19.26

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra032258	EnsemblPlants:Bra032258.1	EnsemblPlants:Bra032258.1-P
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:Histone_H5	InterPro:IPR005818
InterPro:IPR036388	UniProt:M4ETX6	PFAM:PF00538	PRINTS:PR00624	PRINTS:PR00929	PFscan:PS51504
PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0002547CA9
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

AT1G48620 (E=2e-042) HON5 | HON5 (High Mobility Group Family A 5); DNA binding

Coordinates

chrA05:+:12220251..12225989

Molecular Weight (calculated)

64583.8 Da

IEP (calculated)

11.217

GRAVY (calculated)

-0.886

Length

603 amino acids

Sequence
(BLAST)

001: MDPSLPPPPF TAFPPLINSN SNSNPFPPPQ HPFSSAVAQA NNNQFFQPSP PVPCHPSVNH PHYSEMICSA ISALNEPDGS SKQAISRYIE RFYTGIPPAH
101: GSLLTHHLRT LKNSGVLVMV KKSYKLAAAA LEPPRSGFNE TQQLPDPAAT SAPQTQTQTQ KRGRGRPPKS KPTLEQNQLV VSEQMQAQPP PVKRPPGRPR
201: KDGALPTVKA SVPGGEEITK RRGRPPSGRA AGRERKPAVV SAPVSVFPYV ANGGVRRRGR PKRTDAGASS VAPPPKAEGG GEQVAKRGRG RPPKIGGVIR
301: KAMKPKRGYF RTGRPRKNAA SKGASGQQDI SFGELKKKFE LFQEKAKEIV NVLKAEVGGS DNQAVVQAIH DLEELTVTKR ETAEEPRYME DVQPDELYFE
401: NEPQPDGHGQ GQVKQTRFLM AKTARTPSAS HGTGPEAPRS DAAGSPAATD SQKRGRGRPP KSKSDSQDGA VSAAQPARKP SGRPKRNLAT AAVATAPAAA
501: GRPRRSNTVR ATEPQVTAGD GSRKRGRPKK DDVAAPAKKQ RGRKPKSEPV AKKTVGRPKN GASDPRELKK KAALLQKKVK QAADKLKIAV SAIEEVQEIA
601: AGM

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.