Factsheet for Bra022274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92189	Canola	nucleus	87.25	91.12
Bra022273.1-P	Field mustard	nucleus	43.62	38.69
Bra017438.1-P	Field mustard	nucleus	10.51	28.66
Bra021288.1-P	Field mustard	nucleus	25.95	25.49
KRG94697	Soybean	cytosol	9.84	24.44
Bra018744.1-P	Field mustard	nucleus	21.25	23.46
KRH72147	Soybean	cytosol	7.83	22.73
Bra024870.1-P	Field mustard	nucleus	9.4	21.99
KRG88430	Soybean	nucleus	11.63	21.67
VIT_17s0000g02550.t01	Wine grape	nucleus	17.0	21.41
KRH60528	Soybean	nucleus	18.12	21.15
Bra001696.1-P	Field mustard	nucleus	25.73	18.61
KRH41804	Soybean	nucleus	17.0	18.4
KRH39095	Soybean	nucleus	18.12	16.3
Bra032258.1-P	Field mustard	nucleus, plastid	21.48	15.92
Solyc03g119130.2.1	Tomato	nucleus	16.78	14.48
PGSC0003DMT400014700	Potato	extracellular, nucleus	16.11	13.66

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	EnsemblPlantsGene:Bra022274	EnsemblPlants:Bra022274.1	EnsemblPlants:Bra022274.1-P	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	UniProt:M4E0H7	PFAM:PF00538	PFscan:PS51504
PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0002547453	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT1G48620 (E=4e-017) HON5 | HON5 (High Mobility Group Family A 5); DNA binding

Coordinates

chrA05:+:18718176..18720940

Molecular Weight (calculated)

48879.0 Da

IEP (calculated)

6.684

GRAVY (calculated)

-0.570

Length

447 amino acids

Sequence
(BLAST)

001: MDPNHPSNAS FVPGHVTPPN QPVHHVRPIN LSNNVYSHPE FQPQPQFQPM PQFQPHPQFM PQPQQQTPPS RLALVPTQAQ PSINYPPYDD MIFDAIRDLN
101: EPDGSSKTRI SRRIKRSNAV LPPSHAVLMT YHLKTLRKNG VLTMVNNLYK ISAAAPPPPR QGVAVAADLV APRYEVPPMN SSPLDMLGQS SRELPELPVT
201: GPNQVVTESA NRRPDRPRRD GSVPISPTAG AILGFPYPST YASMQQRGRP PSPRAAVSER KRLCIGESSG GVVIAASAGG ETVAVASRMW RGPGCTPNIV
301: WNRPRESATP MSIRAATGTS ESAYGELKRK LDFACEKAKK ILDVLNAGIE NYDFIEMLQA RQEVEGLIPM LTVEPHAMRQ VQPQAMEEVE ALPVEQPQAV
401: EEGPSEEAAA SGGARKFLYW AAQTEAETQG EEHGQEVVEG EQAQPQP

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.