Factsheet for Bra022273.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92188	Canola	nucleus	88.1	88.62
Bra022274.1-P	Field mustard	nucleus	38.69	43.62
Bra017438.1-P	Field mustard	nucleus	8.73	26.83
Bra018744.1-P	Field mustard	nucleus	21.43	26.67
KRH72147	Soybean	cytosol	8.13	26.62
Bra024870.1-P	Field mustard	nucleus	9.92	26.18
Bra021288.1-P	Field mustard	nucleus	23.21	25.71
KRG94697	Soybean	cytosol	9.13	25.56
KRG88430	Soybean	nucleus	11.31	23.75
VIT_17s0000g02550.t01	Wine grape	nucleus	16.67	23.66
KRH60528	Soybean	nucleus	17.06	22.45
KRH41804	Soybean	nucleus	16.87	20.58
KRH39095	Soybean	nucleus	19.05	19.32
Solyc03g119130.2.1	Tomato	nucleus	18.45	17.95
Bra001696.1-P	Field mustard	nucleus	21.43	17.48
Bra032258.1-P	Field mustard	nucleus, plastid	20.83	17.41
PGSC0003DMT400014700	Potato	extracellular, nucleus	17.46	16.7

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra022273	EnsemblPlants:Bra022273.1	EnsemblPlants:Bra022273.1-P
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	UniProt:M4E0H6
PFAM:PF00538	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00384
SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0002547454	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

AT1G48620 (E=3e-010) HON5 | HON5 (High Mobility Group Family A 5); DNA binding

Coordinates

chrA05:+:18727487..18729601

Molecular Weight (calculated)

54382.6 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.665

Length

504 amino acids

Sequence
(BLAST)

001: MDPNHPTNTS FVPGHVTPPN QPVLHVRPII GSNNVYSHPD FQPQPHFQAR PQFQPMPQFQ SRPQFMFRPQ FMPQPQPPLQ QAPPSRLAHV PTQAQPSINY
101: PPYDDMICNI IRELNEPDGS SKSRISRRIK RSSVVLPPSH SVLMTFHLKR LRKNGVLTMV NNLYKIAAAA PPPPPPPPPP PPPPPTPPPP PPPQSVAVAA
201: DLVAPRSEVP PMNTSPLDML AASASGLALG SQPQKRGRGR PPKANPEAPQ EQEPIDAQPV AVMTPGQSSR EQPELHVTDP NQVVTESANR RPDRPRRGRS
301: VPFSPTAGAV LALPAPSTYA RWRSPSRSDA GRERKRPCIG ESSGGIVIAA PAGGETVAVA SGMRRGPGRP RKVVSGRPKM STTPISTREA TGTLESSHGE
401: LKKKLDFACE KAKEILDVLK AGVESNDFIA ISSQAKQELE GLIPILTVET HGVGQVQPDA VEEVEARAVE EVQSEEAAAH TEAETQGEEH GQEGVEGEQA
501: QPHP

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.