Factsheet for Solyc03g119130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014700	Potato	extracellular, nucleus	72.59	71.35
Solyc11g011160.1.1	Tomato	nucleus	11.2	36.25
KRH72147	Soybean	cytosol	10.42	35.06
KRG88430	Soybean	nucleus	15.44	33.33
VIT_17s0000g02550.t01	Wine grape	nucleus	22.39	32.68
Solyc04g007890.2.1	Tomato	nucleus	11.2	32.4
KRG94697	Soybean	cytosol	11.0	31.67
KRH60528	Soybean	nucleus	22.2	30.03
KRH41804	Soybean	nucleus	22.2	27.84
Bra018744.1-P	Field mustard	nucleus	20.27	25.93
CDX93685	Canola	nucleus	20.46	25.85
Bra021288.1-P	Field mustard	nucleus	22.2	25.27
KRH39095	Soybean	nucleus	23.17	24.14
CDX95560	Canola	plastid	22.78	23.98
CDY04315	Canola	nucleus, plastid	20.85	23.89
CDY18486	Canola	nucleus	21.81	23.84
AT1G48620.1	Thale cress	nucleus	21.62	23.38
AT3G18035.1	Thale cress	nucleus	21.24	22.92
CDY40600	Canola	nucleus	19.5	22.7
Solyc05g051290.2.1	Tomato	nucleus	9.07	22.38
CDY67892	Canola	nucleus	11.0	19.52
CDX95791	Canola	nucleus	11.58	18.52
Bra022273.1-P	Field mustard	nucleus	17.95	18.45
CDX92188	Canola	nucleus	17.37	17.96
CDX95794	Canola	nucleus	14.48	17.73
CDX92189	Canola	nucleus	14.09	17.06
CDX75957	Canola	nucleus	20.08	16.88
Bra022274.1-P	Field mustard	nucleus	14.48	16.78
CDY59682	Canola	nucleus, plastid	19.3	16.64
Bra032258.1-P	Field mustard	nucleus, plastid	19.3	16.58
CDY51930	Canola	nucleus	17.57	14.72
Bra001696.1-P	Field mustard	nucleus	17.57	14.72

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	ncoils:Coil	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	UniProt:K4BM62	PFAM:PF00538	PRINTS:PR00929	PFscan:PS51504
PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc03g119130.2
EnsemblPlants:Solyc03g119130.2.1	UniParc:UPI00027663D3	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:67824101..67828893

Molecular Weight (calculated)

54673.3 Da

IEP (calculated)

10.497

GRAVY (calculated)

-0.709

Length

518 amino acids

Sequence
(BLAST)

001: MDPSMDLPMD IEQPTYNPPQ LVNHDLNPPP QDPTLAPDFS FPEPDYAELI TAAITALKEK EGSSRVAIAK YIDRVHPNLP PNHSALLTHH LKRLKNSGYL
101: AMVKHSYLLA TPGSAPPPPE AAAVDSNGGD ATPSKRKPGR PPKSKPDAQY QDPFQGAQIQ AQQQQQAEFQ PQFVPQPQFQ QFQPDPLLQN QILFQSQQQP
201: QGFAAPHEAE NYTNLGAQSV FVSLGLADGP VGVQNPGGSV PSPAGTPAPA SNNKRRSGRP RKDGSTVVRS LETKSPEQSG TKRRPGRSAK TGTVNASSPA
301: SAAASSKPRG RPKKGSTPGR RGRPRKNVSV SVNADAANIP SGNPNIPVGG SDLTAQTPTP KRRGRPAKSN NQGGPAAASV GVTDVPIAAA FDSEGFPNTV
401: SGVTNGATTP LGKRRGRPPK AYSSPAVTST VKRARKLSGK PLGRPKKNVT SPAVSDPKLV VAYEDLKGKL DNMQSRIREA ANALRPCLNA ETPATALAAF
501: QELEELAGPD VAEMEAVV

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.