Factsheet for Bra001696.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51930	Canola	nucleus	99.51	99.51
Bra017438.1-P	Field mustard	nucleus	8.09	30.49
Bra021288.1-P	Field mustard	nucleus	22.33	30.33
Bra024870.1-P	Field mustard	nucleus	8.74	28.27
Bra018744.1-P	Field mustard	nucleus	18.45	28.15
KRG88430	Soybean	nucleus	10.84	27.92
KRH72147	Soybean	cytosol	6.8	27.27
AT3G18035.1	Thale cress	nucleus	20.87	26.88
Bra022274.1-P	Field mustard	nucleus	18.61	25.73
VIT_17s0000g02550.t01	Wine grape	nucleus	14.4	25.07
KRG94697	Soybean	cytosol	7.28	25.0
KRH60528	Soybean	nucleus	14.72	23.76
Bra022273.1-P	Field mustard	nucleus	17.48	21.43
KRH41804	Soybean	nucleus	13.75	20.58
KRH39095	Soybean	nucleus	16.02	19.92
Bra032258.1-P	Field mustard	nucleus, plastid	19.26	19.73
PGSC0003DMT400014700	Potato	extracellular, nucleus	15.21	17.84
Solyc03g119130.2.1	Tomato	nucleus	14.72	17.57

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra001696	EnsemblPlants:Bra001696.1	EnsemblPlants:Bra001696.1-P
ncoils:Coil	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388
UniProt:M4CBW6	PFAM:PF00538	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29
SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI000254046D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

AT1G48620 (E=9e-020) HON5 | HON5 (High Mobility Group Family A 5); DNA binding

Coordinates

chrA03:-:17907539..17909990

Molecular Weight (calculated)

65617.9 Da

IEP (calculated)

4.392

GRAVY (calculated)

-0.496

Length

618 amino acids

Sequence
(BLAST)

001: MDRSDSHQPF DVTTIASTYV PESATAPNAQ TVNESNRVET EVAPVVQPGV EPVVQPQGEP DAASEAALVP AQPSSNPRPY TDMIYDAVVA LNEPEGSSKW
101: AISTYVRRLM NPNCPDGHEA LMTHHLEVMK KSGILTMVKK SYKLAVSSPP GNVAAAGAVA SGSEIPPTYT GSLDMVVASG SEIPRTYTGP LDMVVASGSE
201: IPPTNTSSLD MLAVTASGSA SQPLKRGRGR PPKPKTEAPQ QQQPIDARPI SQAVQPSTNV EPSAVQPSGE QPELPVANPS PVVTEPAKRG PGRPRKDGSG
301: PSVPASNLAV TMKRRGWPMS CRASGRERKP ISVPPPDSML PVATLAPAGE AMAVAAVMKR GPGRPPKRGR GRTAGRPIQD TPRLVTRATA NIQEADYGEL
401: KRRLGLASEK VKEILNVLEA GIAGDKQAVA QAAQELEGLI LMMQPEEAAP PQIESETQGM ELGQGSKGGG EQAPIQTMIL AQPNAMEEVQ PEEAAPEIET
501: EAQGMELGQG SEGGGEQAQI QTLILTQPQP QTLTQPRPQT PPQLQPETLT LTEPEPQILR ELEPQTVPEL EPLPELEPLL ELEPLIDLEP LPLTQSQPQI
601: LPQIEPNTEA EAMDEDIF

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.