Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17659 | Canola | nucleus | 87.43 | 81.46 |
| CDY36240 | Canola | nucleus | 83.77 | 77.67 |
| Bra017438.1-P | Field mustard | nucleus | 48.17 | 56.1 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 50.79 | 53.3 |
| AT1G14900.1 | Thale cress | nucleus | 56.02 | 52.45 |
| Solyc04g007890.2.1 | Tomato | nucleus | 45.55 | 48.6 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 39.27 | 46.58 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 38.22 | 45.34 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 41.36 | 45.14 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 28.8 | 44.72 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 39.79 | 43.93 |
| Zm00001d050368_P001 | Maize | nucleus | 41.88 | 43.72 |
| PGSC0003DMT400075917 | Potato | nucleus | 42.93 | 43.62 |
| Os08t0428800-00 | Rice | nucleus | 40.31 | 43.26 |
| Zm00001d032239_P001 | Maize | plastid | 41.88 | 41.45 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 39.79 | 41.3 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 39.27 | 39.68 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 28.27 | 39.42 |
| EES15017 | Sorghum | nucleus | 40.31 | 38.89 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 17.8 | 38.2 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 37.7 | 38.1 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 37.7 | 38.1 |
| Os09t0402100-01 | Rice | nucleus | 42.41 | 38.03 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 27.23 | 37.96 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 41.36 | 36.74 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 26.7 | 36.69 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 40.31 | 35.81 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 31.41 | 35.29 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 24.61 | 34.56 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 37.7 | 33.49 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 43.98 | 32.31 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 24.08 | 29.3 |
| EER98875 | Sorghum | nucleus | 38.74 | 22.77 |
| Zm00001d020412_P001 | Maize | cytosol | 35.6 | 22.15 |
| Bra018744.1-P | Field mustard | nucleus | 32.98 | 15.56 |
| Bra021288.1-P | Field mustard | nucleus | 27.23 | 11.43 |
| Bra022273.1-P | Field mustard | nucleus | 26.18 | 9.92 |
| Bra032258.1-P | Field mustard | nucleus, plastid | 30.89 | 9.78 |
| Bra022274.1-P | Field mustard | nucleus | 21.99 | 9.4 |
| Bra001696.1-P | Field mustard | nucleus | 28.27 | 8.74 |
Protein Annotations
| MapMan:35.2 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlantsGene:Bra024870 | EnsemblPlants:Bra024870.1 | EnsemblPlants:Bra024870.1-P | GO:GO:0000785 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA |
| InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | UniProt:M4E7W4 | PFAM:PF02178 | PRINTS:PR00929 |
| PRINTS:PR00930 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 |
| SUPFAM:SSF46785 | UniParc:UPI000253F99A | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
AT1G14900 (E=4e-021) HMGA | HMGA (HIGH MOBILITY GROUP A); DNA binding
Coordinates
chrA06:-:23987705..23988427
Molecular Weight (calculated)
20253.0 Da
IEP (calculated)
10.652
GRAVY (calculated)
-1.083
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETELEPQ QSPMAEEQQP TIEASNDATG CNKTAIAKHS ESTQTSLPPS HMTLLSSHLN QMKQSGQITM VKNNYMKPDP QAPPKRGRGR PPKAKPQGES
101: SHVAVPAPAP SVSSPRPRGR PPKAKDPSSE VETKVAAPSG SGRPRGRPPK KQKTESEAVK ADVEPAEAPA GERRGRGRPP KAKPAMVPVG C
101: SHVAVPAPAP SVSSPRPRGR PPKAKDPSSE VETKVAAPSG SGRPRGRPPK KQKTESEAVK ADVEPAEAPA GERRGRGRPP KAKPAMVPVG C
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.