Factsheet for VIT_13s0074g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0024g01410.t01	Wine grape	plastid	90.7	90.7
VIT_09s0018g01850.t01	Wine grape	plastid	89.77	89.77
VIT_15s0021g02830.t01	Wine grape	nucleus	46.98	82.11
VIT_01s0011g05360.t01	Wine grape	nucleus	60.47	71.43
Solyc04g007890.2.1	Tomato	nucleus	35.81	43.02
TraesCS5D01G400300.1	Wheat	nucleus	32.09	42.86
TraesCS5B01G395400.1	Wheat	nucleus	31.16	41.61
OQU80556	Sorghum	cytoskeleton, cytosol, nucleus	17.21	41.57
PGSC0003DMT400075917	Potato	nucleus	34.42	39.36
Zm00001d050368_P001	Maize	nucleus	33.49	39.34
Os08t0428800-00	Rice	nucleus	32.56	39.33
TraesCS5A01G390500.1	Wheat	nucleus	31.63	39.31
Bra017438.1-P	Field mustard	nucleus	29.77	39.02
GSMUA_Achr6P04240_001	Banana	nucleus	31.16	38.29
AT1G14900.1	Thale cress	nucleus	36.28	38.24
CDY17659	Canola	nucleus	36.28	38.05
CDY04096	Canola	nucleus	28.84	37.8
Bra024870.1-P	Field mustard	nucleus	33.49	37.7
CDY36240	Canola	nucleus	35.81	37.38
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.72	37.23
HORVU5Hr1G095410.1	Barley	nucleus	23.72	37.23
CDY09431	Canola	cytosol	19.07	35.96
TraesCS5A01G204700.1	Wheat	nucleus	31.16	35.45
Zm00001d032239_P001	Maize	plastid	30.7	34.2
GSMUA_Achr7P10310_001	Banana	nucleus	26.51	33.53
TraesCS5D01G211400.1	Wheat	nucleus	29.3	33.33
GSMUA_Achr7P12540_001	Banana	cytosol	21.4	33.09
EES15017	Sorghum	nucleus	30.23	32.83
HORVU5Hr1G060800.2	Barley	nucleus	27.44	32.07
CDY48812	Canola	cytosol	19.53	31.82
TraesCS5B01G203600.1	Wheat	nucleus	27.91	31.75
CDY09432	Canola	nucleus	27.44	30.73
GSMUA_Achr9P28490_001	Banana	nucleus	19.07	30.15
Os09t0402100-01	Rice	nucleus	29.3	29.58
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	18.6	25.48
GSMUA_Achr5P05890_001	Banana	cytosol	30.7	25.38
CDY48811	Canola	mitochondrion, nucleus	22.79	19.92
VIT_17s0000g02550.t01	Wine grape	nucleus	30.23	18.31
EER98875	Sorghum	nucleus	26.98	17.85
Zm00001d020412_P001	Maize	cytosol	24.19	16.94

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100260834	wikigene:100260834	MapMan:35.2	InterPro:AT_hook_DNA-bd_motif	ProteinID:CBI40230
ProteinID:CBI40230.3	UniProt:D7UBW5	EMBL:FN596753	GO:GO:0000785	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006334	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	EntrezGene:LOC100260834	wikigene:LOC100260834	PFAM:PF00538	PRINTS:PR00929
PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0001BE5336
ArrayExpress:VIT_13s0074g00560	EnsemblPlantsGene:VIT_13s0074g00560	EnsemblPlants:VIT_13s0074g00560.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002265692
RefSeq:XP_002265692.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:8549063..8549710

Molecular Weight (calculated)

23050.2 Da

IEP (calculated)

11.414

GRAVY (calculated)

-0.559

Length

215 amino acids

Sequence
(BLAST)

001: MTVILAHPPP PFSLRHAMHP KPSHFSMAMH GHFLPIPQPP SSILQHLETT MAAIKALNDK SGSSKSSISK HIESAHGDLP AAHSTLLAHH LNRRKQNGDP
101: VMVRNHCMKP DPNAPPRKGR GRPPELEVPL PPGTVLAPPR PRCHPLKPRD PFALVSPPKK ASSGSGKPCG RSLEKPKVGT SSALAPATGA ARPRGWPPKA
201: KPAVVPVGCR FEQRC

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.