Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017438.1-P | Field mustard | nucleus | 85.98 | 85.98 |
| CDY09431 | Canola | cytosol | 40.85 | 58.77 |
| CDY36240 | Canola | nucleus | 62.2 | 49.51 |
| CDY17659 | Canola | nucleus | 61.59 | 49.27 |
| CDY48812 | Canola | cytosol | 39.02 | 48.48 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 50.0 | 45.05 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 24.39 | 44.94 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 33.54 | 44.72 |
| AT1G14900.1 | Thale cress | nucleus | 54.88 | 44.12 |
| Solyc04g007890.2.1 | Tomato | nucleus | 46.95 | 43.02 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 35.37 | 42.34 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 41.46 | 42.24 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 40.85 | 41.61 |
| Os08t0428800-00 | Rice | nucleus | 45.12 | 41.57 |
| CDY09432 | Canola | nucleus | 47.56 | 40.62 |
| PGSC0003DMT400075917 | Potato | nucleus | 45.73 | 39.89 |
| Zm00001d050368_P001 | Maize | nucleus | 44.51 | 39.89 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 41.46 | 39.31 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 40.24 | 37.71 |
| Zm00001d032239_P001 | Maize | plastid | 43.29 | 36.79 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 30.49 | 36.76 |
| EES15017 | Sorghum | nucleus | 43.9 | 36.36 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.88 | 35.77 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 29.88 | 35.25 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 38.41 | 34.24 |
| Os09t0402100-01 | Rice | nucleus | 43.9 | 33.8 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 38.41 | 33.33 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 37.8 | 32.8 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 37.2 | 32.28 |
| CDY48811 | Canola | mitochondrion, nucleus | 46.95 | 31.3 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 32.32 | 31.18 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 40.24 | 30.7 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 39.63 | 30.23 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 28.05 | 29.3 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 37.8 | 28.84 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 43.9 | 27.69 |
| Zm00001d020412_P001 | Maize | cytosol | 36.59 | 19.54 |
| EER98875 | Sorghum | nucleus | 35.37 | 17.85 |
| CDX93685 | Canola | nucleus | 35.37 | 14.15 |
| CDX95791 | Canola | nucleus | 27.44 | 13.89 |
| CDY67892 | Canola | nucleus | 24.39 | 13.7 |
| CDY40600 | Canola | nucleus | 34.15 | 12.58 |
| CDX95794 | Canola | nucleus | 28.05 | 10.87 |
| CDY04315 | Canola | nucleus, plastid | 29.88 | 10.84 |
| CDY18486 | Canola | nucleus | 30.49 | 10.55 |
| CDX92189 | Canola | nucleus | 26.22 | 10.05 |
| CDX95560 | Canola | plastid | 29.88 | 9.96 |
| CDX92188 | Canola | nucleus | 28.05 | 9.18 |
| CDY59682 | Canola | nucleus, plastid | 32.32 | 8.82 |
| CDY51930 | Canola | nucleus | 29.88 | 7.93 |
| CDX75957 | Canola | nucleus | 29.27 | 7.79 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | GO:A0A078ES87 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY04096 | ProteinID:CDY04096 |
| ProteinID:CDY04096.1 | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00117730001 | InterPro:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 |
| InterPro:IPR036388 | PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 | PRINTS:PR00930 | PFscan:PS51504 |
| PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0004EF0A86 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaA09g18740D
Coordinates
chrLK031949:+:63086..63772
Molecular Weight (calculated)
17670.2 Da
IEP (calculated)
10.739
GRAVY (calculated)
-0.880
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MFEMATEQHP ISLPPYPQMI MAAIEASNDA NGCNKTAIAK HIESTQSILP PSHSTLLNYH LNQMKQSGQI VMVKNNYMKP DPHAPPKRGR GRPPKPQGDS
101: SHVAIPAPSV SPPRTRGRPP KANDSSSEAK SKVSPSVPGT PRGRPPKKAK KESEKVKEAT SVSA
101: SHVAIPAPSV SPPRTRGRPP KANDSSSEAK SKVSPSVPGT PRGRPPKKAK KESEKVKEAT SVSA
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.