CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93685	Canola	nucleus	52.21	57.56
CDY59682	Canola	nucleus, plastid	72.12	54.24
CDY40600	Canola	nucleus	52.21	53.03
AT1G48620.1	Thale cress	nucleus	49.12	46.35
CDY18486	Canola	nucleus	40.04	38.19
CDX95560	Canola	plastid	40.71	37.4
KRG88430	Soybean	nucleus	19.03	35.83
KRH72147	Soybean	cytosol	11.73	34.42
VIT_17s0000g02550.t01	Wine grape	nucleus	26.11	33.24
KRG94697	Soybean	cytosol	13.05	32.78
KRH60528	Soybean	nucleus	27.21	32.11
CDY17659	Canola	nucleus	14.38	31.71
CDY36240	Canola	nucleus	14.38	31.55
CDY48812	Canola	cytosol	8.85	30.3
KRH41804	Soybean	nucleus	27.65	30.27
CDY04096	Canola	nucleus	10.84	29.88
CDY09431	Canola	cytosol	7.52	29.82
KRH39095	Soybean	nucleus	27.21	24.75
CDY09432	Canola	nucleus	10.18	23.96
CDY67892	Canola	nucleus	15.27	23.63
CDX75957	Canola	nucleus	31.42	23.05
PGSC0003DMT400014700	Potato	extracellular, nucleus	26.77	22.96
CDX95791	Canola	nucleus	16.15	22.53
CDX95794	Canola	nucleus	20.35	21.75
CDX92189	Canola	nucleus	20.58	21.73
CDX92188	Canola	nucleus	23.67	21.36
Solyc03g119130.2.1	Tomato	nucleus	23.89	20.85
CDY48811	Canola	mitochondrion, nucleus	9.96	18.29
CDY51930	Canola	nucleus	25.0	18.28

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078EQS5	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDY04315	ProteinID:CDY04315
ProteinID:CDY04315.1	GO:GO:0000785	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006334	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00118128001	InterPro:HMGA	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818
InterPro:IPR036388	PFAM:PF00538	PRINTS:PR00929	PRINTS:PR00930	PFscan:PS51504	PANTHER:PTHR11467
PANTHER:PTHR11467:SF29	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EE133F	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC05g25770D

Coordinates

chrLK031951:-:497560..500133

Molecular Weight (calculated)

48609.5 Da

IEP (calculated)

10.644

GRAVY (calculated)

-0.756

Length

452 amino acids

Sequence
(BLAST)

001: MDPSLPPPFT AFPPFTNSNP FPPPQHPFYG GAVNSSAVAP SNNNQFFQPS PPVPSHPSVN HPHYSEMICS AISALNEPDG SSKQAISRYI ERFYTGIPPA
101: HGSLLTHHLR TLKNSGVLFM VKKSYKLAAA THPTSVAVAA AAAAAGLEPP RSDFNETQQL PDPAATSAPQ TQKRGRGRGR PPKAKPADVQ TNGKPTSEQN
201: QLAVSEQMQA QTPPVKRPPG RPRKDGALPT LKASVSGGEE IAKRRGRPPS GRAAGRERKP AVVSAPVSVF PYVANGGVRR RGRPKRIDAG ASSVAPPPKA
301: EGVGEQVAKR GRGRPPKIGG VIRKAMKPKR GYFRTGRPVG RPRKNAASKG ASGQQDISFG ELKKKFELFQ EKAKEIVNVL KAEVGGSDNQ AVVQAIHDLE
401: ELTVTKRETT EEPRHMEDVQ PDELYFENEP QPDGHGQGQV QTETEAMQEA LF

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.