CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95791	Canola	nucleus	85.62	77.16
CDX92189	Canola	nucleus	69.52	47.43
CDX95794	Canola	nucleus	54.45	37.59
CDY09431	Canola	cytosol	10.62	27.19
CDX92188	Canola	nucleus	46.23	26.95
CDY48812	Canola	cytosol	11.64	25.76
CDY17659	Canola	nucleus	17.81	25.37
CDY36240	Canola	nucleus	17.81	25.24
CDY04096	Canola	nucleus	13.7	24.39
KRG94697	Soybean	cytosol	14.04	22.78
KRH72147	Soybean	cytosol	11.64	22.08
KRG88430	Soybean	nucleus	17.47	21.25
CDY09432	Canola	nucleus	13.01	19.79
VIT_17s0000g02550.t01	Wine grape	nucleus	20.89	17.18
CDY48811	Canola	mitochondrion, nucleus	14.04	16.67
CDY40600	Canola	nucleus	23.63	15.51
KRH60528	Soybean	nucleus	20.21	15.4
CDX93685	Canola	nucleus	21.58	15.37
CDY04315	Canola	nucleus, plastid	23.63	15.27
CDX95560	Canola	plastid	25.68	15.24
CDY18486	Canola	nucleus	24.32	14.98
KRH41804	Soybean	nucleus	18.15	12.83
KRH39095	Soybean	nucleus	19.52	11.47
PGSC0003DMT400014700	Potato	extracellular, nucleus	20.21	11.2
Solyc03g119130.2.1	Tomato	nucleus	19.52	11.0
CDY59682	Canola	nucleus, plastid	22.26	10.82
CDY51930	Canola	nucleus	22.26	10.52
CDX75957	Canola	nucleus	20.89	9.9

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078JR67	UniProt:A0A078JR67	EnsemblPlants:CDY67892	ProteinID:CDY67892
ProteinID:CDY67892.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00067633001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	PFAM:PF00538	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29
SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EE853B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaUnng02610DBnaUnng02610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR67]

Coordinates

chrLK036625:-:4585..6744

Molecular Weight (calculated)

32662.2 Da

IEP (calculated)

10.671

GRAVY (calculated)

-0.546

Length

292 amino acids

Sequence
(BLAST)

001: MDPNHPSNAS FVPGHVTPPN QPVLHVRPIN LSNNVYSHPE FQLQPQFQPR PQFQPRPQFQ PCPQFMPQPQ QQTAPSQLAL VLVQAQPSIN YPPYDDMIFE
101: AIRDLNEPDG SSKSRISRRI KRSNAVLPPS HAVLVTYHLK TLRRSGFLTM VNNLYKIAAA APPPRQRVAV AADLVAPRYE VPPMNSSPLD MLGQSSRELP
201: ELPVTDPNQV VTESANRRPD RPRRDGSVPI SPTAGATLGL PYPSIRHRCS SWWRTVAVAS RMWRGLGCTP NIVWNRPREP QTKAEAMQGA LI

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.