CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021288.1-P	Field mustard	nucleus	82.91	86.37
CDX95560	Canola	plastid	76.58	73.78
CDX93685	Canola	nucleus	35.23	40.73
CDY04315	Canola	nucleus, plastid	38.19	40.04
CDY40600	Canola	nucleus	36.29	38.65
CDY09431	Canola	cytosol	7.81	32.46
VIT_17s0000g02550.t01	Wine grape	nucleus	23.63	31.55
KRG88430	Soybean	nucleus	15.82	31.25
KRH72147	Soybean	cytosol	10.13	31.17
KRH60528	Soybean	nucleus	25.11	31.07
CDY36240	Canola	nucleus	13.5	31.07
CDY17659	Canola	nucleus	13.29	30.73
CDY04096	Canola	nucleus	10.55	30.49
KRH41804	Soybean	nucleus	25.11	28.81
CDX92189	Canola	nucleus	25.95	28.74
CDX75957	Canola	nucleus	37.13	28.57
KRG94697	Soybean	cytosol	10.55	27.78
CDY48812	Canola	cytosol	7.59	27.27
CDY59682	Canola	nucleus, plastid	33.97	26.79
CDX95791	Canola	nucleus	17.93	26.23
CDX95794	Canola	nucleus	22.57	25.3
CDY09432	Canola	nucleus	9.92	24.48
CDY67892	Canola	nucleus	14.98	24.32
CDX92188	Canola	nucleus	25.53	24.15
KRH39095	Soybean	nucleus	24.47	23.34
CDY51930	Canola	nucleus	29.32	22.49
PGSC0003DMT400014700	Potato	extracellular, nucleus	24.89	22.39
Solyc03g119130.2.1	Tomato	nucleus	23.84	21.81
CDY48811	Canola	mitochondrion, nucleus	9.7	18.7

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078FZM5	UniProt:A0A078FZM5	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDY18486
ProteinID:CDY18486	ProteinID:CDY18486.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00005492001	InterPro:Histone_H1/H5_H15	InterPro:IPR005818
InterPro:IPR036388	PFAM:PF00538	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33
SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EE3281	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaA01g27090DBnaA01g27090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZM5]

Coordinates

chrLK032086:-:44845..48663

Molecular Weight (calculated)

50619.8 Da

IEP (calculated)

10.311

GRAVY (calculated)

-0.759

Length

474 amino acids

Sequence
(BLAST)

001: MDPSLSSDPH RPQQYSPFPQ YPPSNSPFVS APNLPFYGVN QTPFNTHVSP PQPQTQTQTQ TPPPYSELIV EAIAHLNEPE GSSKMAISRY IERSNPVLPT
101: DHQALLAHHL KTLKNCGVLS MVKKSYKLAA SSSAPESVAV AAAAAAAGLA PPPRSESPLD PAPLSASQPQ KRGRGRPPKP KPEASPQQQQ QLIIAQPNAV
201: QLNGQPSWEQ PQFPVPSPTQ TGTESAKRGP GRPRKDGSAP IPRPAGMSVI MKRRGRPPGR RAAGRQRKPL SVSSTASVFP YVANGARRRG RPRRVDSGGV
301: PVAAPAGGEA VAAAPGIKRG RGRPPKIGGV KNRLITKPKR GRGRPVGRPR KNPWPVTVAT GALESAYGEL KAKLDLCNEK AKEILNVLNT GITNNDNQAA
401: VEAAQKLEGL ISMMTVEPQA VEEAQPEEAA PQTEAEEPQE AEGHGQEREG EEDQAPTDQT QVQTDAEAMQ EALF

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.