CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67892	Canola	nucleus	77.16	85.62
CDX92189	Canola	nucleus	82.72	62.62
CDX95794	Canola	nucleus	52.16	39.95
CDY09431	Canola	cytosol	10.49	29.82
CDY04096	Canola	nucleus	13.89	27.44
CDX92188	Canola	nucleus	41.67	26.95
CDY17659	Canola	nucleus	16.98	26.83
CDY36240	Canola	nucleus	16.98	26.7
CDY48812	Canola	cytosol	10.49	25.76
KRG94697	Soybean	cytosol	13.89	25.0
KRG88430	Soybean	nucleus	16.36	22.08
KRH72147	Soybean	cytosol	10.19	21.43
CDY09432	Canola	nucleus	12.35	20.83
CDY18486	Canola	nucleus	26.23	17.93
VIT_17s0000g02550.t01	Wine grape	nucleus	19.14	17.46
CDY48811	Canola	mitochondrion, nucleus	12.96	17.07
CDX95560	Canola	plastid	25.93	17.07
KRH60528	Soybean	nucleus	19.75	16.71
CDX93685	Canola	nucleus	20.99	16.59
CDY40600	Canola	nucleus	22.53	16.4
CDY04315	Canola	nucleus, plastid	22.53	16.15
KRH41804	Soybean	nucleus	17.59	13.8
CDY51930	Canola	nucleus	24.38	12.78
KRH39095	Soybean	nucleus	18.21	11.87
Solyc03g119130.2.1	Tomato	nucleus	18.52	11.58
PGSC0003DMT400014700	Potato	extracellular, nucleus	18.52	11.39
CDY59682	Canola	nucleus, plastid	20.99	11.31
CDX75957	Canola	nucleus	20.06	10.55

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078E362	EnsemblPlants:CDX95791	ProteinID:CDX95791	ProteinID:CDX95791.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00101726001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388
PFAM:PF00538	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00526	SUPFAM:SSF46785
UniParc:UPI0004EDC8FB	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC05g35420D

Coordinates

chrLK031891:+:246850..250789

Molecular Weight (calculated)

35382.2 Da

IEP (calculated)

9.909

GRAVY (calculated)

-0.509

Length

324 amino acids

Sequence
(BLAST)

001: MDPNYPSNTS FVPGHVTPPN QPVLHVTPIN LSNNVYSHPE FQPQPQFQPR PQFQPRPQFQ PCPQFMPQPQ QQTAPSQLAL VPVQAQPSIN YPPYDDMIFE
101: AIRDLNEPDG SSKSRISRRI KRSNAVLPPS HAVLVTYHLK TLRRSGVLTM VNNLYKIAAA APPPRQRVAV AADLVAPRYE VPPMNSSPLD MLGQSSRELP
201: ELPVTDPNQV VTESANRRPD RPRRDGSVPI SPTAGATLGL PYPSTYASML QRGRPPSPRA AVSESKRLCI GESSGGVVIA APAGGETVAV ASRMWRGPGC
301: TPNIVWNRPR EPQTEAEAMQ GALV

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.