Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra022273.1-P | Field mustard | nucleus | 88.62 | 88.1 |
CDX95794 | Canola | nucleus | 43.91 | 52.01 |
CDY67892 | Canola | nucleus | 26.95 | 46.23 |
CDX92189 | Canola | nucleus | 36.93 | 43.22 |
CDX95791 | Canola | nucleus | 26.95 | 41.67 |
CDY04096 | Canola | nucleus | 9.18 | 28.05 |
CDY17659 | Canola | nucleus | 11.38 | 27.8 |
CDY36240 | Canola | nucleus | 11.18 | 27.18 |
KRH72147 | Soybean | cytosol | 8.18 | 26.62 |
CDX95560 | Canola | plastid | 25.95 | 26.42 |
CDY40600 | Canola | nucleus | 22.95 | 25.84 |
CDX93685 | Canola | nucleus | 20.96 | 25.61 |
CDY18486 | Canola | nucleus | 24.15 | 25.53 |
KRG94697 | Soybean | cytosol | 8.98 | 25.0 |
CDY09431 | Canola | cytosol | 5.39 | 23.68 |
CDY04315 | Canola | nucleus, plastid | 21.36 | 23.67 |
VIT_17s0000g02550.t01 | Wine grape | nucleus | 16.77 | 23.66 |
KRG88430 | Soybean | nucleus | 11.18 | 23.33 |
CDY48812 | Canola | cytosol | 5.99 | 22.73 |
KRH60528 | Soybean | nucleus | 16.57 | 21.67 |
KRH41804 | Soybean | nucleus | 16.77 | 20.34 |
CDX75957 | Canola | nucleus | 24.35 | 19.81 |
CDY09432 | Canola | nucleus | 7.58 | 19.79 |
KRH39095 | Soybean | nucleus | 18.76 | 18.91 |
CDY51930 | Canola | nucleus | 22.75 | 18.45 |
Solyc03g119130.2.1 | Tomato | nucleus | 17.96 | 17.37 |
CDY59682 | Canola | nucleus, plastid | 20.76 | 17.3 |
PGSC0003DMT400014700 | Potato | extracellular, nucleus | 16.97 | 16.13 |
CDY48811 | Canola | mitochondrion, nucleus | 7.39 | 15.04 |
Protein Annotations
Gene3D:1.10.10.10 | MapMan:35.2 | GO:A0A078DY39 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDX92188 | ProteinID:CDX92188 |
ProteinID:CDX92188.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00153894001 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 |
InterPro:IPR036388 | PFAM:PF00538 | PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 |
SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0004EE874F | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
SEG:seg | : | : | : | : | : |
Description
BnaA05g22190D
Coordinates
chrLK031871:-:700263..702370
Molecular Weight (calculated)
53953.1 Da
IEP (calculated)
9.602
GRAVY (calculated)
-0.651
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNHPTNTS FVPGHVTPPN QPVLHVRPII GSNNVYSHPD FQPQPHFQAR PQFQPMPQFQ SRPQFMFRPQ FMPQPQPPLQ QAPPSRLAHV PTQAQPSINY
101: PPYDDMICNI IRELNEPDGS SKSRISRRIK RSSVVLPPSH SVLMTFHLKR LRKNGVLTMV NNLYKIAAAA PPPPPPPPPP PPPPPTPPPP PPPQSVAVAA
201: DLVAPRSEVP PMNTSPLDML AASASGLALG SQPQKRGRGR PPKANPEAPQ EQEPIDAQPV AVMTPGQSSR EQPELHVTDP NQVVTESANR RPDRPRRGRS
301: VPFSPTAGAV LALPAPSTYA RWRSPSRSDA GRERKRPCIG ESSGGIVIAA PAGGETVAVA SGMRRGPGRP RKVVSGRPKM STTPISTREA TGTLESSHGE
401: LKKKLDFACE KAKEILDVLK AGIESNDFIA ISSQAKQELK GLIPILTVET HGVGQVQPDA VEAGAVEEVQ SEEAAAHTEA ETQGEEHGQE AVEGEQAQPH
501: P
101: PPYDDMICNI IRELNEPDGS SKSRISRRIK RSSVVLPPSH SVLMTFHLKR LRKNGVLTMV NNLYKIAAAA PPPPPPPPPP PPPPPTPPPP PPPQSVAVAA
201: DLVAPRSEVP PMNTSPLDML AASASGLALG SQPQKRGRGR PPKANPEAPQ EQEPIDAQPV AVMTPGQSSR EQPELHVTDP NQVVTESANR RPDRPRRGRS
301: VPFSPTAGAV LALPAPSTYA RWRSPSRSDA GRERKRPCIG ESSGGIVIAA PAGGETVAVA SGMRRGPGRP RKVVSGRPKM STTPISTREA TGTLESSHGE
401: LKKKLDFACE KAKEILDVLK AGIESNDFIA ISSQAKQELK GLIPILTVET HGVGQVQPDA VEAGAVEEVQ SEEAAAHTEA ETQGEEHGQE AVEGEQAQPH
501: P
001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
Arabidopsis Description
HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.