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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022273.1-P Field mustard nucleus 88.62 88.1
CDX95794 Canola nucleus 43.91 52.01
CDY67892 Canola nucleus 26.95 46.23
CDX92189 Canola nucleus 36.93 43.22
CDX95791 Canola nucleus 26.95 41.67
CDY04096 Canola nucleus 9.18 28.05
CDY17659 Canola nucleus 11.38 27.8
CDY36240 Canola nucleus 11.18 27.18
KRH72147 Soybean cytosol 8.18 26.62
CDX95560 Canola plastid 25.95 26.42
CDY40600 Canola nucleus 22.95 25.84
CDX93685 Canola nucleus 20.96 25.61
CDY18486 Canola nucleus 24.15 25.53
KRG94697 Soybean cytosol 8.98 25.0
CDY09431 Canola cytosol 5.39 23.68
CDY04315 Canola nucleus, plastid 21.36 23.67
VIT_17s0000g02550.t01 Wine grape nucleus 16.77 23.66
KRG88430 Soybean nucleus 11.18 23.33
CDY48812 Canola cytosol 5.99 22.73
KRH60528 Soybean nucleus 16.57 21.67
KRH41804 Soybean nucleus 16.77 20.34
CDX75957 Canola nucleus 24.35 19.81
CDY09432 Canola nucleus 7.58 19.79
KRH39095 Soybean nucleus 18.76 18.91
CDY51930 Canola nucleus 22.75 18.45
Solyc03g119130.2.1 Tomato nucleus 17.96 17.37
CDY59682 Canola nucleus, plastid 20.76 17.3
PGSC0003DMT400014700 Potato extracellular, nucleus 16.97 16.13
CDY48811 Canola mitochondrion, nucleus 7.39 15.04
Protein Annotations
Gene3D:1.10.10.10MapMan:35.2GO:A0A078DY39InterPro:AT_hook_DNA-bd_motifEnsemblPlants:CDX92188ProteinID:CDX92188
ProteinID:CDX92188.1GO:GO:0000786GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006334GO:GO:0008150
GO:GO:0009987GO:GO:0016043EnsemblPlantsGene:GSBRNA2T00153894001InterPro:HMGA_plantInterPro:Histone_H1/H5_H15InterPro:IPR005818
InterPro:IPR036388PFAM:PF00538PRINTS:PR00929PFscan:PS51504PANTHER:PTHR11467PANTHER:PTHR11467:SF29
SMART:SM00384SMART:SM00526SUPFAM:SSF46785UniParc:UPI0004EE874FInterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sf
SEG:seg:::::
Description
BnaA05g22190D
Coordinates
chrLK031871:-:700263..702370
Molecular Weight (calculated)
53953.1 Da
IEP (calculated)
9.602
GRAVY (calculated)
-0.651
Length
501 amino acids
Sequence
(BLAST)
001: MDPNHPTNTS FVPGHVTPPN QPVLHVRPII GSNNVYSHPD FQPQPHFQAR PQFQPMPQFQ SRPQFMFRPQ FMPQPQPPLQ QAPPSRLAHV PTQAQPSINY
101: PPYDDMICNI IRELNEPDGS SKSRISRRIK RSSVVLPPSH SVLMTFHLKR LRKNGVLTMV NNLYKIAAAA PPPPPPPPPP PPPPPTPPPP PPPQSVAVAA
201: DLVAPRSEVP PMNTSPLDML AASASGLALG SQPQKRGRGR PPKANPEAPQ EQEPIDAQPV AVMTPGQSSR EQPELHVTDP NQVVTESANR RPDRPRRGRS
301: VPFSPTAGAV LALPAPSTYA RWRSPSRSDA GRERKRPCIG ESSGGIVIAA PAGGETVAVA SGMRRGPGRP RKVVSGRPKM STTPISTREA TGTLESSHGE
401: LKKKLDFACE KAKEILDVLK AGIESNDFIA ISSQAKQELK GLIPILTVET HGVGQVQPDA VEAGAVEEVQ SEEAAAHTEA ETQGEEHGQE AVEGEQAQPH
501: P
Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)
001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
Arabidopsis Description
HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.