CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51930	Canola	nucleus	50.0	49.84
CDY18486	Canola	nucleus	28.57	37.13
CDX95560	Canola	plastid	28.9	36.18
CDX93685	Canola	nucleus	23.05	34.63
AT3G18035.1	Thale cress	nucleus	26.62	34.17
CDY40600	Canola	nucleus	23.7	32.81
CDY04315	Canola	nucleus, plastid	23.05	31.42
CDY04096	Canola	nucleus	7.79	29.27
KRH60528	Soybean	nucleus	18.02	28.98
KRG88430	Soybean	nucleus	11.2	28.75
KRH72147	Soybean	cytosol	6.98	27.92
VIT_17s0000g02550.t01	Wine grape	nucleus	16.07	27.89
CDY17659	Canola	nucleus	9.25	27.8
CDY09431	Canola	cytosol	5.03	27.19
CDY36240	Canola	nucleus	9.09	27.18
KRH41804	Soybean	nucleus	17.69	26.39
CDY48812	Canola	cytosol	5.36	25.0
KRG94697	Soybean	cytosol	7.31	25.0
CDX92189	Canola	nucleus	17.21	24.77
CDX92188	Canola	nucleus	19.81	24.35
CDX95794	Canola	nucleus	16.72	24.35
CDY59682	Canola	nucleus, plastid	23.54	24.13
KRH39095	Soybean	nucleus	18.18	22.54
PGSC0003DMT400014700	Potato	extracellular, nucleus	18.02	21.06
CDY67892	Canola	nucleus	9.9	20.89
CDY09432	Canola	nucleus	6.33	20.31
Solyc03g119130.2.1	Tomato	nucleus	16.88	20.08
CDX95791	Canola	nucleus	10.55	20.06
CDY48811	Canola	mitochondrion, nucleus	6.66	16.67

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078CGQ5	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDX75957	ProteinID:CDX75957
ProteinID:CDX75957.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00123987001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818
InterPro:IPR036388	PFAM:PF00538	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29
SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EE0A20	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaC03g40400D

Coordinates

chrLK031805:-:2152372..2154871

Molecular Weight (calculated)

65866.4 Da

IEP (calculated)

4.615

GRAVY (calculated)

-0.536

Length

616 amino acids

Sequence
(BLAST)

001: MDRSDSHQPF DVTTIASTYV PESATAPNAL TVNESNRVET QVAPVVQPEV EPVVQPQGEP DAASEAALVP AQPSSNRRPY TDMIYDAVVA LNEPEGSSKW
101: AISRYVQMLN PNCPDGHEAL MTHHLEVMKK SGILTMVKKS YKLAVSSPPG NVAAAGHVAS GSEIPPTYTG PLDMVVASGS EIPPTNTGSH DMLAVTASGS
201: ASQPLKRGRG RPPKPKTEAP QQQQPIDAQP ISQALQPSIN VEPSAVQPSG EEQPELPVTN PSPVVTEPAK RGPGRPRKDG SGPSVPASNL AVTMKRRGWP
301: MSCRASGRER KPISVPAPDS MLPVAANDAG RPERLMRGGS GGVATLAPAG EEAMAVAAVM KRGPGRPPKR GRGRTAGRPI QDIPRPVTRA TGTIQEAGHG
401: VLKRKLDLAR EKVKEILNVL DAGIAGDNLA VAQAAQELEG LIQMMTVEPH AMEEVQPEET APQIETETQE MELGQGSEGG GEQAQIQTLI LTQPQPQTLT
501: QPQPQTSPQL HPETLPLPLP QTLTLIQPQP QTMSDPQPQT MPLPQTLTLT EPEPQILREL EPQTVPELEP LPELEPLLEL EPLRDLEPLP LTQSQPQILP
601: QIQPNTEAEA MDEDMF

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.