CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93685	Canola	nucleus	69.21	75.12
CDY04315	Canola	nucleus, plastid	53.03	52.21
AT1G48620.1	Thale cress	nucleus	55.51	51.57
CDX95560	Canola	plastid	41.12	37.2
CDY59682	Canola	nucleus, plastid	49.66	36.77
CDY18486	Canola	nucleus	38.65	36.29
CDY04096	Canola	nucleus	12.58	34.15
VIT_17s0000g02550.t01	Wine grape	nucleus	26.52	33.24
CDY17659	Canola	nucleus	15.28	33.17
CDY36240	Canola	nucleus	15.28	33.01
KRH60528	Soybean	nucleus	27.42	31.85
KRH72147	Soybean	cytosol	11.01	31.82
KRG88430	Soybean	nucleus	16.85	31.25
CDY48812	Canola	cytosol	9.21	31.06
KRG94697	Soybean	cytosol	12.13	30.0
CDY09431	Canola	cytosol	7.64	29.82
KRH41804	Soybean	nucleus	26.07	28.09
CDY09432	Canola	nucleus	11.01	25.52
KRH39095	Soybean	nucleus	27.19	24.35
CDX75957	Canola	nucleus	32.81	23.7
CDY67892	Canola	nucleus	15.51	23.63
CDX92188	Canola	nucleus	25.84	22.95
CDX95794	Canola	nucleus	21.57	22.7
CDX95791	Canola	nucleus	16.4	22.53
PGSC0003DMT400014700	Potato	extracellular, nucleus	25.84	21.82
CDX92189	Canola	nucleus	20.9	21.73
Solyc03g119130.2.1	Tomato	nucleus	22.7	19.5
CDY51930	Canola	nucleus	26.52	19.09
CDY48811	Canola	mitochondrion, nucleus	10.11	18.29

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078HPX6	UniProt:A0A078HPX6	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDY40600
ProteinID:CDY40600	ProteinID:CDY40600.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00071435001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15
InterPro:IPR005818	InterPro:IPR036388	PFAM:PF00538	PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467
PANTHER:PTHR11467:SF29	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EDAE14	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaC06g02160DBnaC06g02160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPX6]

Coordinates

chrLK032475:-:52769..55307

Molecular Weight (calculated)

47548.3 Da

IEP (calculated)

10.707

GRAVY (calculated)

-0.779

Length

445 amino acids

Sequence
(BLAST)

001: MDPSLSAPND PHHSPPFTAY PNPFSVHHHP FYSNPVNSSA VAPPSSNNNN NNQFYQPQPQ PQPTWVHPPY SEMICCAIAA LNEADGSSKQ AISRYIERTY
101: TGIPTAHGAL MTHHLKSLKN SGVLVMVKKS YKLAAASSVA AAEPPRSDFT SNYSVNQTQP LPDLAPTSTQ KRGRGRGRPP KAKPDAHTNG LPVSPPQAQP
201: QSVVKRPPGR PRKDGALPTV KTPAVSGGVE TAKRRGRPPS GRAAGRERKP AVVSAPASVI PYVPNGGVRR RGRPKRVDAG ASSAALPPPP PPKADGGGSV
301: VVAKRGRGRP PKIGGVMRKP MKPKRGGYVR TGRPLGRPRK NAAAKGASRQ QDIGFGELQK KFELFQEKAK EIVNVLKAEV GGSGNHAVVQ AIQALEELTV
401: TTTEEPQHME EVQPDEQHHG NEQEPEGHGQ GQALTEAEAM QEALF

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.