Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48812 | Canola | cytosol | 40.62 | 59.09 |
| CDY09431 | Canola | cytosol | 32.29 | 54.39 |
| CDY04096 | Canola | nucleus | 40.62 | 47.56 |
| CDY17659 | Canola | nucleus | 47.4 | 44.39 |
| CDY36240 | Canola | nucleus | 46.88 | 43.69 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 36.98 | 39.01 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 27.6 | 38.69 |
| AT1G14900.1 | Thale cress | nucleus | 40.1 | 37.75 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 23.96 | 37.4 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 17.19 | 37.08 |
| Solyc04g007890.2.1 | Tomato | nucleus | 32.29 | 34.64 |
| PGSC0003DMT400075917 | Potato | nucleus | 32.29 | 32.98 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 27.6 | 32.92 |
| Os08t0428800-00 | Rice | nucleus | 30.21 | 32.58 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 29.69 | 32.57 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 23.44 | 32.37 |
| Zm00001d050368_P001 | Maize | nucleus | 30.21 | 31.69 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 26.04 | 31.06 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 27.08 | 30.06 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 20.83 | 29.2 |
| Zm00001d032239_P001 | Maize | plastid | 29.17 | 29.02 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 28.12 | 28.57 |
| EES15017 | Sorghum | nucleus | 29.17 | 28.28 |
| Os09t0402100-01 | Rice | nucleus | 30.73 | 27.7 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 27.08 | 27.51 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 30.73 | 27.44 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 30.73 | 27.44 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 26.04 | 27.17 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 23.96 | 27.06 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 26.56 | 26.98 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 30.21 | 26.98 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 18.23 | 25.74 |
| CDY48811 | Canola | mitochondrion, nucleus | 31.25 | 24.39 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 19.27 | 23.57 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 31.25 | 23.08 |
| EER98875 | Sorghum | nucleus | 28.65 | 16.92 |
| Zm00001d020412_P001 | Maize | cytosol | 25.52 | 15.96 |
| CDX93685 | Canola | nucleus | 28.12 | 13.17 |
| CDY67892 | Canola | nucleus | 19.79 | 13.01 |
| CDX95791 | Canola | nucleus | 20.83 | 12.35 |
| CDY40600 | Canola | nucleus | 25.52 | 11.01 |
| CDY04315 | Canola | nucleus, plastid | 23.96 | 10.18 |
| CDX95794 | Canola | nucleus | 21.88 | 9.93 |
| CDY18486 | Canola | nucleus | 24.48 | 9.92 |
| CDX95560 | Canola | plastid | 24.48 | 9.55 |
| CDX92189 | Canola | nucleus | 19.27 | 8.64 |
| CDX92188 | Canola | nucleus | 19.79 | 7.58 |
| CDY59682 | Canola | nucleus, plastid | 22.92 | 7.32 |
| CDX75957 | Canola | nucleus | 20.31 | 6.33 |
| CDY51930 | Canola | nucleus | 20.31 | 6.31 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | GO:A0A078F8K6 | UniProt:A0A078F8K6 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY09432 |
| ProteinID:CDY09432 | ProteinID:CDY09432.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00030930001 | InterPro:HMGA_plant |
| InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | PFAM:PF00538 | PRINTS:PR00929 | PFscan:PS51504 |
| PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0004EF45BD | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
BnaA02g25780DBnaA02g25780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8K6]
Coordinates
chrLK031995:-:900966..901792
Molecular Weight (calculated)
21587.2 Da
IEP (calculated)
10.417
GRAVY (calculated)
-0.747
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGLDIQQT PTMVEHPPQI QEIPFSLLPY HQMIMEAIEA SNDAKGCTKT AILKHIETTQ THLPPSHLTL LDYHLNQMKH SGKIVIVKNY YMKPDQKPKP
101: QGDSSHVAVT SPSVSYSLRL RGRPPRTKSN DSFSGADLTE EKKEVLTPSV SGRPRGRTPK KEKMVAKTNG VRREPGRPRK VKFKLLSSLL TE
101: QGDSSHVAVT SPSVSYSLRL RGRPPRTKSN DSFSGADLTE EKKEVLTPSV SGRPRGRTPK KEKMVAKTNG VRREPGRPRK VKFKLLSSLL TE
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.