Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0024g01410.t01 | Wine grape | plastid | 97.67 | 97.67 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 89.77 | 89.77 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 46.98 | 82.11 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 63.26 | 74.73 |
| Solyc04g007890.2.1 | Tomato | nucleus | 36.28 | 43.58 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 32.56 | 43.48 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 31.63 | 42.24 |
| Zm00001d050368_P001 | Maize | nucleus | 35.35 | 41.53 |
| AT1G14900.1 | Thale cress | nucleus | 39.07 | 41.18 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 33.49 | 41.14 |
| Bra017438.1-P | Field mustard | nucleus | 31.16 | 40.85 |
| CDY17659 | Canola | nucleus | 38.6 | 40.49 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 16.74 | 40.45 |
| Bra024870.1-P | Field mustard | nucleus | 35.81 | 40.31 |
| PGSC0003DMT400075917 | Potato | nucleus | 34.88 | 39.89 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 32.09 | 39.88 |
| CDY36240 | Canola | nucleus | 38.14 | 39.81 |
| CDY04096 | Canola | nucleus | 30.23 | 39.63 |
| Os08t0428800-00 | Rice | nucleus | 32.09 | 38.76 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 23.72 | 37.23 |
| CDY09431 | Canola | cytosol | 19.53 | 36.84 |
| Zm00001d032239_P001 | Maize | plastid | 33.02 | 36.79 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 32.09 | 36.51 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 31.63 | 35.98 |
| EES15017 | Sorghum | nucleus | 33.02 | 35.86 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.79 | 35.77 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 22.79 | 35.25 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 30.7 | 34.92 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 29.77 | 34.78 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 26.98 | 34.12 |
| Os09t0402100-01 | Rice | nucleus | 31.63 | 31.92 |
| CDY48812 | Canola | cytosol | 19.07 | 31.06 |
| CDY09432 | Canola | nucleus | 26.98 | 30.21 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 34.42 | 28.46 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 17.67 | 27.94 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 19.53 | 26.75 |
| CDY48811 | Canola | mitochondrion, nucleus | 23.26 | 20.33 |
| VIT_17s0000g02550.t01 | Wine grape | nucleus | 30.7 | 18.59 |
| EER98875 | Sorghum | nucleus | 27.91 | 18.46 |
| Zm00001d020412_P001 | Maize | cytosol | 25.58 | 17.92 |
Protein Annotations
| EntrezGene:100262155 | wikigene:100262155 | MapMan:35.2 | InterPro:AT_hook_DNA-bd_motif | ProteinID:CBI25277 | ProteinID:CBI25277.3 |
| UniProt:D7T445 | EMBL:FN595513 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 |
| EntrezGene:LOC100262155 | wikigene:LOC100262155 | PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 |
| SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0001BE276D | ArrayExpress:VIT_09s0018g01850 | EnsemblPlantsGene:VIT_09s0018g01850 | EnsemblPlants:VIT_09s0018g01850.t01 |
| InterPro:WH_DNA-bd_sf | RefSeq:XP_002273423 | RefSeq:XP_002273423.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:+:19354200..19354847
Molecular Weight (calculated)
23354.5 Da
IEP (calculated)
11.744
GRAVY (calculated)
-0.641
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVILAHPPP PFSLRHAMHP KPSRFSMAMH GHFLPIPQPP SSILQHLETT MAAIEALNDK SGSSKSFISK HIESAHGDLS AAHSTLLVHH LNRRKQNGDP
101: VMVRNHCMKP DPNAPPRKGR GRPPEPEFPL PLGTVLAPPR PRCHPLKPRD PFALVSPPKK ASSGSGKPRG RPPEKPKVGT SSAPAPATGA SRPRGWPPKA
201: KPVVVPVGWR FEQRC
101: VMVRNHCMKP DPNAPPRKGR GRPPEPEFPL PLGTVLAPPR PRCHPLKPRD PFALVSPPKK ASSGSGKPRG RPPEKPKVGT SSAPAPATGA SRPRGWPPKA
201: KPVVVPVGWR FEQRC
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.