Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G204700.1 | Wheat | nucleus | 93.12 | 93.12 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 90.48 | 90.48 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 84.13 | 86.41 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 50.26 | 59.01 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 49.21 | 53.14 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 47.09 | 48.9 |
| Os09t0402100-01 | Rice | nucleus | 55.03 | 48.83 |
| KRH72991 | Soybean | nucleus | 44.97 | 48.3 |
| KRH17357 | Soybean | nucleus | 44.97 | 48.3 |
| KRH17355 | Soybean | nucleus | 44.97 | 48.3 |
| KRH72989 | Soybean | nucleus | 44.44 | 47.73 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 34.39 | 47.45 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 33.86 | 46.04 |
| Solyc11g011160.1.1 | Tomato | nucleus | 38.1 | 45.0 |
| PGSC0003DMT400040569 | Potato | nucleus | 37.57 | 44.38 |
| KRH30939 | Soybean | nucleus | 42.86 | 44.02 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 28.57 | 43.9 |
| KRG97935 | Soybean | nucleus | 41.8 | 43.41 |
| Bra017438.1-P | Field mustard | nucleus | 35.45 | 40.85 |
| CDY17659 | Canola | nucleus | 43.92 | 40.49 |
| Solyc04g007890.2.1 | Tomato | nucleus | 38.1 | 40.22 |
| CDY36240 | Canola | nucleus | 42.86 | 39.32 |
| Bra024870.1-P | Field mustard | nucleus | 39.68 | 39.27 |
| PGSC0003DMT400075917 | Potato | nucleus | 38.62 | 38.83 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 52.91 | 38.46 |
| CDY04096 | Canola | nucleus | 33.33 | 38.41 |
| AT1G14900.1 | Thale cress | nucleus | 40.74 | 37.75 |
| PGSC0003DMT400037815 | Potato | nucleus | 33.33 | 36.84 |
| CDY09431 | Canola | cytosol | 22.22 | 36.84 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 37.04 | 32.56 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 36.51 | 32.09 |
| Solyc05g051290.2.1 | Tomato | nucleus | 34.92 | 31.43 |
| CDY48812 | Canola | cytosol | 21.16 | 30.3 |
| Zm00001d020412_P001 | Maize | cytosol | 48.15 | 29.64 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 33.33 | 29.3 |
| EER98875 | Sorghum | nucleus | 47.62 | 27.69 |
| CDY09432 | Canola | nucleus | 27.51 | 27.08 |
| CDY48811 | Canola | mitochondrion, nucleus | 25.93 | 19.92 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA | InterPro:HMGI/Y_DNA-bd_CS | InterPro:Histone_H1/H5_H15 |
| InterPro:IPR005818 | InterPro:IPR036388 | PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 | PRINTS:PR00930 |
| ScanProsite:PS00354 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF85 | SMART:SM00384 | SMART:SM00526 |
| SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS5D01G211400 | EnsemblPlants:TraesCS5D01G211400.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr5D:-:319733416..319734119
Molecular Weight (calculated)
19458.3 Da
IEP (calculated)
11.023
GRAVY (calculated)
-0.838
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDGSPKSG DIPPYPEMIL AAIEALGDKN GSSKSAISSY IEEKYEGLPS AHASLLTANL ASMKEAGKLA FVKNNYLKAD APSATPAKRG RGRPPKDPNA
101: PPKPKAAPKD PNTPKRGRGR PPKAKDPMAD AVKDAVAKAT TGMPRGRGRP PGPSSAKKAK VAKEAASPAP ADGSAPAKRG RGRPRKVAV
101: PPKPKAAPKD PNTPKRGRGR PPKAKDPMAD AVKDAVAKAT TGMPRGRGRP PGPSSAKKAK VAKEAASPAP ADGSAPAKRG RGRPRKVAV
001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF
Arabidopsis Description
HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.