Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G395400.1 | Wheat | nucleus | 89.44 | 89.44 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 91.3 | 84.97 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 36.65 | 66.29 |
| Os08t0428800-00 | Rice | nucleus | 72.67 | 65.73 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 55.9 | 65.69 |
| Zm00001d050368_P001 | Maize | nucleus | 67.08 | 59.02 |
| Zm00001d032239_P001 | Maize | plastid | 67.7 | 56.48 |
| EES15017 | Sorghum | nucleus | 68.32 | 55.56 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 58.39 | 53.71 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 42.86 | 50.37 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 59.01 | 50.26 |
| Solyc11g011160.1.1 | Tomato | nucleus | 49.69 | 50.0 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 55.9 | 49.45 |
| PGSC0003DMT400040569 | Potato | nucleus | 49.07 | 49.38 |
| KRH72991 | Soybean | nucleus | 52.8 | 48.3 |
| KRH17357 | Soybean | nucleus | 52.8 | 48.3 |
| KRH72989 | Soybean | nucleus | 52.17 | 47.73 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 36.02 | 47.15 |
| KRH17355 | Soybean | nucleus | 50.93 | 46.59 |
| CDY09431 | Canola | cytosol | 32.3 | 45.61 |
| KRH30939 | Soybean | nucleus | 51.55 | 45.11 |
| KRG97935 | Soybean | nucleus | 50.31 | 44.51 |
| Bra017438.1-P | Field mustard | nucleus | 44.72 | 43.9 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 37.89 | 43.88 |
| Solyc04g007890.2.1 | Tomato | nucleus | 47.2 | 42.46 |
| CDY04096 | Canola | nucleus | 41.61 | 40.85 |
| CDY17659 | Canola | nucleus | 51.55 | 40.49 |
| CDY36240 | Canola | nucleus | 50.93 | 39.81 |
| PGSC0003DMT400037815 | Potato | nucleus | 42.24 | 39.77 |
| Bra024870.1-P | Field mustard | nucleus | 46.58 | 39.27 |
| PGSC0003DMT400075917 | Potato | nucleus | 45.34 | 38.83 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 62.11 | 38.46 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 37.27 | 38.22 |
| AT1G14900.1 | Thale cress | nucleus | 46.58 | 36.76 |
| Solyc05g051290.2.1 | Tomato | nucleus | 45.34 | 34.76 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 45.34 | 33.95 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 43.48 | 32.56 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 42.86 | 32.09 |
| CDY48812 | Canola | cytosol | 26.09 | 31.82 |
| CDY09432 | Canola | nucleus | 32.92 | 27.6 |
| CDY48811 | Canola | mitochondrion, nucleus | 32.92 | 21.54 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGI/Y_DNA-bd_CS | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 |
| PFAM:PF00538 | PRINTS:PR00929 | ScanProsite:PS00354 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF85 |
| SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS5D01G400300 | EnsemblPlants:TraesCS5D01G400300.1 | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:465448107..465448914
Molecular Weight (calculated)
17143.6 Da
IEP (calculated)
10.992
GRAVY (calculated)
-0.904
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEQVAKPA SLPPYPEMIL AAIAALNDKN GSNKSAISKH IEGKYGDLPK EHAALLTAHL VRMKESGQLL FLKNNYFRTD APDAPPKRGR GRPRKPIDPN
101: APPKPASPRP RGRPVKPKDP EAEAANPPKK AKTAPAPAVD GSAKRGRGRP PKARPAEPAA A
101: APPKPASPRP RGRPVKPKDP EAEAANPPKK AKTAPAPAVD GSAKRGRGRP PKARPAEPAA A
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.