Factsheet for Zm00001d032239_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050368_P001	Maize	nucleus	78.76	83.06
Os08t0428800-00	Rice	nucleus	73.58	79.78
EES15017	Sorghum	nucleus	80.31	78.28
OQU80556	Sorghum	cytoskeleton, cytosol, nucleus	35.75	77.53
TraesCS5B01G395400.1	Wheat	nucleus	56.99	68.32
TraesCS5D01G400300.1	Wheat	nucleus	56.48	67.7
TraesCS5A01G390500.1	Wheat	nucleus	59.07	65.9
GSMUA_Achr6P04240_001	Banana	nucleus	56.48	62.29
HORVU5Hr1G095410.1	Barley	nucleus	41.45	58.39
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.41	56.93
VIT_01s0011g05360.t01	Wine grape	nucleus	50.78	53.85
KRH72991	Soybean	nucleus	46.11	50.57
KRH17357	Soybean	nucleus	46.11	50.57
KRH72989	Soybean	nucleus	45.6	50.0
PGSC0003DMT400040569	Potato	nucleus	41.45	50.0
KRH17355	Soybean	nucleus	44.56	48.86
Solyc11g011160.1.1	Tomato	nucleus	40.41	48.75
KRH30939	Soybean	nucleus	45.6	47.83
KRG97935	Soybean	nucleus	45.08	47.8
GSMUA_Achr7P12540_001	Banana	cytosol	33.68	46.76
Solyc04g007890.2.1	Tomato	nucleus	41.45	44.69
Bra017438.1-P	Field mustard	nucleus	37.82	44.51
GSMUA_Achr5P05890_001	Banana	cytosol	59.59	44.23
VIT_15s0021g02830.t01	Wine grape	nucleus	27.98	43.9
CDY04096	Canola	nucleus	36.79	43.29
PGSC0003DMT400037815	Potato	nucleus	37.82	42.69
PGSC0003DMT400075917	Potato	nucleus	41.45	42.55
Bra024870.1-P	Field mustard	nucleus	41.45	41.88
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	33.68	41.4
CDY17659	Canola	nucleus	43.52	40.98
CDY36240	Canola	nucleus	43.52	40.78
CDY09431	Canola	cytosol	23.83	40.35
AT1G14900.1	Thale cress	nucleus	42.49	40.2
Solyc05g051290.2.1	Tomato	nucleus	37.82	34.76
VIT_15s0024g01410.t01	Wine grape	plastid	38.34	34.42
VIT_09s0018g01850.t01	Wine grape	plastid	36.79	33.02
VIT_13s0074g00560.t01	Wine grape	plastid	34.2	30.7
CDY09432	Canola	nucleus	29.02	29.17
CDY48812	Canola	cytosol	19.69	28.79
Zm00001d020412_P001	Maize	cytosol	45.08	28.34
CDY48811	Canola	mitochondrion, nucleus	28.5	22.36

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	EntrezGene:541871	UniProt:A0A1R3M7Z7	EMBL:AF291748	InterPro:AT_hook_DNA-bd_motif
EMBL:CM007647	EMBL:EU952311	GO:GO:0000003	GO:GO:0000785	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006334	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043
GO:GO:0043565	GO:GO:2000014	InterPro:HMGA	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388
ProteinID:ONM04693.1	PFAM:PF00538	PFAM:PF02178	PRINTS:PR00929	PRINTS:PR00930	PFscan:PS51504
PANTHER:PTHR11467	PANTHER:PTHR11467:SF85	UniProt:Q9FYS5	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785
UniParc:UPI00000A1DE2	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d032239	EnsemblPlants:Zm00001d032239_P001	EnsemblPlants:Zm00001d032239_T001
SEG:seg	:	:	:	:	:

Description

high mobility group family A 102 high mobility group family A 102

Coordinates

chr1:+:218500155..218501623

Molecular Weight (calculated)

19825.7 Da

IEP (calculated)

11.199

GRAVY (calculated)

-0.839

Length

193 amino acids

Sequence
(BLAST)

001: MATDEATKPS PIPPYPEMIL AAIEGLDDKS GSNKSAISKY IEGKYGSLPP AHASLLTAHL ARMKESGELV FLKNNYFRAG APDAPPKRGR GRPPKARDPN
101: APAPAPKSPS STGRGRGRPP KAKSPLEAAV KQATAGMPKP RGRPPKKAKT DGAASPSPSP APAPAGDGST PGKRGRGRPP KVRPAVPSET AAA

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.