Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P04240_001 | Banana | nucleus | 70.07 | 54.86 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 32.85 | 50.56 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 45.26 | 44.6 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 50.37 | 42.86 |
| Os08t0428800-00 | Rice | nucleus | 55.47 | 42.7 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 49.63 | 42.24 |
| Zm00001d050368_P001 | Maize | nucleus | 54.01 | 40.44 |
| Zm00001d032239_P001 | Maize | plastid | 56.93 | 40.41 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 50.37 | 39.88 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 39.42 | 39.42 |
| EES15017 | Sorghum | nucleus | 54.74 | 37.88 |
| KRH72991 | Soybean | nucleus | 48.18 | 37.5 |
| KRH72989 | Soybean | nucleus | 48.18 | 37.5 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 48.91 | 36.81 |
| KRH17357 | Soybean | nucleus | 46.72 | 36.36 |
| KRH17355 | Soybean | nucleus | 46.72 | 36.36 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 48.18 | 35.87 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 32.12 | 35.77 |
| PGSC0003DMT400040569 | Potato | nucleus | 40.88 | 35.0 |
| KRH30939 | Soybean | nucleus | 46.72 | 34.78 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 47.45 | 34.39 |
| Solyc11g011160.1.1 | Tomato | nucleus | 40.15 | 34.38 |
| Os09t0402100-01 | Rice | nucleus | 53.28 | 34.27 |
| KRG97935 | Soybean | nucleus | 45.26 | 34.07 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 46.72 | 33.86 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 41.61 | 33.53 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 45.26 | 32.8 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 36.5 | 31.85 |
| Solyc04g007890.2.1 | Tomato | nucleus | 41.61 | 31.84 |
| PGSC0003DMT400037815 | Potato | nucleus | 38.69 | 30.99 |
| PGSC0003DMT400075917 | Potato | nucleus | 42.34 | 30.85 |
| CDY48812 | Canola | cytosol | 29.2 | 30.3 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 29.93 | 30.15 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 56.93 | 30.0 |
| AT1G14900.1 | Thale cress | nucleus | 44.53 | 29.9 |
| CDY04096 | Canola | nucleus | 35.77 | 29.88 |
| CDY09431 | Canola | cytosol | 24.82 | 29.82 |
| Bra017438.1-P | Field mustard | nucleus | 35.04 | 29.27 |
| CDY17659 | Canola | nucleus | 43.8 | 29.27 |
| CDY36240 | Canola | nucleus | 43.8 | 29.13 |
| CDY09432 | Canola | nucleus | 38.69 | 27.6 |
| Bra024870.1-P | Field mustard | nucleus | 37.96 | 27.23 |
| Solyc05g051290.2.1 | Tomato | nucleus | 40.15 | 26.19 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 37.23 | 23.72 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 37.23 | 23.72 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 35.77 | 22.79 |
| Zm00001d020412_P001 | Maize | cytosol | 43.07 | 19.22 |
| EER98875 | Sorghum | nucleus | 44.53 | 18.77 |
| CDY48811 | Canola | mitochondrion, nucleus | 27.74 | 15.45 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSMUA_Achr5G24470_001 |
| EnsemblPlants:GSMUA_Achr5P24470_001 | EnsemblPlants:GSMUA_Achr5T24470_001 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 |
| UniProt:M0T1C2 | PFAM:PF00538 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00384 |
| SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0002964E49 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
Putative HMG-Y-related protein A [Source:GMGC_GENE;Acc:GSMUA_Achr5G24470_001]
Coordinates
chr5:-:25803486..25804007
Molecular Weight (calculated)
14332.5 Da
IEP (calculated)
11.124
GRAVY (calculated)
-0.255
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGLVRALQM IMEAIEALNE KNGSNKSAIS KYIETKYGEL PPSHSSLLTA HLARMRESGE LLFIKNNYFR PGADDPLAAA VAKATAGLPR RRGRPPKAAR
101: SAASGTAAPA AAAAGSGVKR GRGRPPKVKP ALVTDVV
101: SAASGTAAPA AAAAGSGVKR GRGRPPKVKP ALVTDVV
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.